Evidence map›Paper›PMID 36069678›Full record

ArticleeLife2022

LINE-1 retrotransposons facilitate horizontal gene transfer into poxviruses.

M Julhasur Rahman, Sherry L Haller, Ana M M Stoian, Jie Li, Greg Brennan, Stefan Rothenburg

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Monkeypox Virus (MPXV) Infection: A Review.Infectious disorders drug targets · 2024
    Review
  3. Article
  4. Article
  5. Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Poxvirus Recombination.Pathogens (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M Julhasur RahmanDepartment of Medial Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, United States.
Sherry L HallerCenter for Biodefense and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston, United States.
Ana M M StoianDepartment of Medial Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, United States.
Jie LiGenome Center, University of California, Davis, Davis, United States.
Greg BrennanDepartment of Medial Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, United States.ORCID 0000-0002-4339-9045
Stefan RothenburgDepartment of Medial Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, United States.ORCID 0000-0002-2525-8230

Funding

Molecular mechanisms and ramifications of horizontal gene transfer into poxvirusesR01AI146915 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ROTHENBURG, STEFAN · 2020 to 2024
$1.9M
NIAID NIH HHS R01 AI146915
6 · The paper itself

Abstract

There is ample phylogenetic evidence that many critical virus functions, like immune evasion, evolved by the acquisition of genes from their hosts through horizontal gene transfer (HGT). However, the lack of an experimental system has prevented a mechanistic understanding of this process. We developed a model to elucidate the mechanisms of HGT into vaccinia virus, the prototypic poxvirus. All identified gene capture events showed signatures of long interspersed nuclear element-1 (LINE-1)-mediated retrotransposition, including spliced-out introns, polyadenylated tails, and target site duplications. In one case, the acquired gene integrated together with a polyadenylated host U2 small nuclear RNA. Integrations occurred across the genome, in some cases knocking out essential viral genes. These essential gene knockouts were rescued through a process of complementation by the parent virus followed by nonhomologous recombination during serial passaging to generate a single, replication-competent virus. This work links multiple evolutionary mechanisms into one adaptive cascade and identifies host retrotransposons as major drivers for virus evolution.

Indexed as

PoxviridaeGene Transfer, HorizontalPhylogenyRetroelementsVaccinia virusRetroelementsevolutionhorizontal gene transferinfectious diseaseLINE-1microbiologyPKRpoxvirusretrotransposonsviruses

Identifiers

PMID36069678
PMCPMC9578709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.