Evidence map›Paper›PMID 36068275›Full record

ArticleScientific reports2022

Prediction of disease progression indicators in prostate cancer patients receiving HDR-brachytherapy using Raman spectroscopy and semi-supervised learning: a pilot study.

Kirsty Milligan, Xinchen Deng, Ramie Ali-Adeeb, Phillip Shreeves, Samantha Punch, Nathalie Costie, Juanita M Crook, Alexandre G Brolo, Julian J Lum, Jeffrey L Andrews and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Kirsty MilliganDepartment of Physics, University of British Columbia, Kelowna, BC, Canada.
Xinchen DengDepartment of Physics, University of British Columbia, Kelowna, BC, Canada.
Ramie Ali-AdeebDepartment of Physics, University of British Columbia, Kelowna, BC, Canada.
Phillip ShreevesDepartment of Statistics, University of British Columbia, Kelowna, Canada.
Samantha PunchTrev and Joyce Deeley Research Centre, BC Cancer, Victoria, BC, Canada.
Nathalie CostieTrev and Joyce Deeley Research Centre, BC Cancer, Victoria, BC, Canada.
Juanita M CrookDepartment of Radiation Oncology, University of British Columbia, Kelowna, BC, Canada.
Alexandre G BroloDepartment of Chemistry, University of Victoria, British Columbia, Canada.
Julian J LumTrev and Joyce Deeley Research Centre, BC Cancer, Victoria, BC, Canada.
Jeffrey L AndrewsDepartment of Statistics, University of British Columbia, Kelowna, Canada.
Andrew JirasekDepartment of Physics, University of British Columbia, Kelowna, BC, Canada. andrew.jirasek@ubc.ca.
University of British Columbia · CAUniversity of Victoria · CA

Funding

CIHR PJT 162279
6 · The paper itself

Abstract

This work combines Raman spectroscopy (RS) with supervised learning methods-group and basis restricted non-negative matrix factorisation (GBR-NMF) and linear discriminant analysis (LDA)-to aid in the prediction of clinical indicators of disease progression in a cohort of 9 patients receiving high dose rate brachytherapy (HDR-BT) as the primary treatment for intermediate risk (D'Amico) prostate adenocarcinoma. The combination of Raman spectroscopy and GBR-NMF-sparseLDA modelling allowed for the prediction of the following clinical information; Gleason score, cancer of the prostate risk assessment (CAPRA) score of pre-treatment biopsies and a Ki67 score of < 3.5% or > 3.5% in post treatment biopsies. The three clinical indicators of disease progression investigated in this study were predicted using a single set of Raman spectral data acquired from each individual biopsy, obtained pre HDR-BT treatment. This work highlights the potential of RS, combined with supervised learning, as a tool for the prediction of multiple types of clinically relevant information to be acquired simultaneously using pre-treatment biopsies, therefore opening up the potential for avoiding the need for multiple immunohistochemistry (IHC) staining procedures (H&E, Ki67) and blood sample analysis (PSA) to aid in CAPRA scoring.

Indexed as

BrachytherapyProstatic NeoplasmsDisease ProgressionHumansKi-67 AntigenMalePilot ProjectsProstate-Specific AntigenRadiotherapy DosageSpectrum Analysis, RamanSupervised Machine LearningKi-67 AntigenProstate-Specific Antigen

Identifiers

PMID36068275
PMCPMC9448740
OpenAlexW4294741468

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.