Evidence map›Paper›PMID 36068271›Full record

ArticleCommunications biology2022

Fine-mapping and identification of candidate causal genes for tail length in the Merinolandschaf breed.

Dominik Karl Lagler, Elisabeth Hannemann, Kim Eck, Jürgen Klawatsch, Doris Seichter, Ingolf Russ, Christian Mendel, Gesine Lühken, Stefan Krebs, Helmut Blum and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

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  15. CTCF-dependent insulation ofProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Dominik Karl LaglerPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany.
Elisabeth HannemannPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany.
Kim EckPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany.
Jürgen KlawatschPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany.
Doris SeichterTierzuchtforschung e.V. München, Senator-Gerauer-Str. 23, 85586, Poing, Germany.
Ingolf RussTierzuchtforschung e.V. München, Senator-Gerauer-Str. 23, 85586, Poing, Germany.
Christian MendelInstitute for Animal Breeding, Bavarian State Research Center for Agriculture, Prof.-Dürrwaechter-Platz 1, 85586, Poing, Germany.
Gesine LühkenInstitute of Animal Breeding and Genetics, JLU Gießen, Ludwigstr. 21, 35390, Gießen, Germany.
Stefan KrebsLaboratory for Functional Genome Analysis, Gene Center, Ludwig-Maximilians-University Munich, 80539, Munich, Germany.
Helmut BlumLaboratory for Functional Genome Analysis, Gene Center, Ludwig-Maximilians-University Munich, 80539, Munich, Germany.ORCID 0000-0002-3994-2332
Maulik UpadhyayPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany.
Ivica MedugoracPopulation Genomics Group, Department of Veterinary Sciences, LMU Munich, Lena-Christ-Str. 48, 82152, Martinsried, Germany. i.medugorac@lmu.de.ORCID 0000-0002-6891-3039
Ludwig-Maximilians-Universität München · DEBavarian State Research Center for Agriculture · DELMU Klinikum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Docking the tails of lambs in long-tailed sheep breeds is a common practice worldwide. But this practice is associated with pain. Breeding for a shorter tail could offer an alternative. Therefore, this study aimed to analyze the natural tail length variation in the Merinolandschaf and to identify causal alleles for the short tail phenotype segregating within long-tailed breeds. We used SNP-based association analysis and haplotype-based mapping in 362 genotyped (Illumina OvineSNP50) and phenotyped Merinolandschaf lambs. Genome-wide significant regions were capture sequenced in 48 lambs and comparatively analyzed in various long and short-tailed sheep breeds and wild sheep subspecies. Here we show a SNP located in the first exon of HOXB13 and a SINE element located in the promotor of HOXB13 as promising candidates. These results enable more precise breeding towards shorter tails, improve animal welfare by amplification of ancestral alleles and contribute to a better understanding of differential embryonic development.

Indexed as

Sheep, DomesticAllelesAnimalsFemaleGenotypeHaplotypesPhenotypePregnancySheep

Identifiers

PMID36068271
PMCPMC9448734
OpenAlexW4294844579

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.