Evidence map›Paper›PMID 36068231›Full record

ArticleScientific data2022

ASL-BIDS, the brain imaging data structure extension for arterial spin labeling.

Patricia Clement, Marco Castellaro, Thomas W Okell, David L Thomas, Pieter Vandemaele, Sara Elgayar, Aaron Oliver-Taylor, Thomas Kirk, Joseph G Woods, Sjoerd B Vos and 11 more

Abstract read
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Patricia ClementDepartment of Diagnostic Sciences, Ghent University, Ghent, Belgium. patricia.clement@ugent.be.ORCID 0000-0001-8546-0134
Marco CastellaroDepartment of Information Engineering, University of Padova, Padova, Italy.
Thomas W OkellWellcome Centre for Integrative Neuroimaging, FMRIB Division, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.ORCID 0000-0001-8258-0659
David L ThomasDementia Research Centre, UCL Queen Square Institute of Neurology, University College London, Queen Square, London, UK.ORCID 0000-0003-1491-1641
Pieter VandemaeleDepartment of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Sara ElgayarFaculty of computers and information science, Ain Shams University, Cairo, Egypt.
Aaron Oliver-TaylorGold Standard Phantoms, London, UK.
Thomas KirkInstitute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, UK.
Joseph G WoodsWellcome Centre for Integrative Neuroimaging, FMRIB Division, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.ORCID 0000-0002-0329-824X
Sjoerd B VosNeuroradiological Academic Unit, Department of Brain Repair and Rehabilitation, UCL Queen Square Institute of Neurology, University College London, Queen Square, London, UK.ORCID 0000-0002-8502-4487
Joost P A KuijerDepartment of Radiology and Nuclear Medicine, Amsterdam University Medical Center, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Eric AchtenDepartment of Diagnostic Sciences, Ghent University, Ghent, Belgium.ORCID 0000-0002-5148-4178
Matthias J P van OschC.J. Gorter MRI Center, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands.
BIDS maintainers
John A DetreDepartment of Radiology, University of Pennsylvania, Philadelphia, PA, USA.
Hanzhang LuDepartment of Radiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
David C AlsopDepartment of Radiology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Michael A ChappellWellcome Centre for Integrative Neuroimaging, FMRIB Division, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.
Luis Hernandez-GarciaFunctional MRI Laboratory, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0003-3002-0304
Jan PetrDepartment of Radiology and Nuclear Medicine, Amsterdam University Medical Center, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Henk J M M MutsaertsDepartment of Diagnostic Sciences, Ghent University, Ghent, Belgium.ORCID 0000-0003-0894-0307

Funding

TRD 4: Platforms for multi-modal and multi-scale imaging dataP41EB031771 · NIBIB · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI Hanzhang Lu, Peter CM Van Zijl · 2021 to 2026
$9.9M
NIBIB NIH HHS P41 EB031771
6 · The paper itself

Abstract

Arterial spin labeling (ASL) is a non-invasive MRI technique that allows for quantitative measurement of cerebral perfusion. Incomplete or inaccurate reporting of acquisition parameters complicates quantification, analysis, and sharing of ASL data, particularly for studies across multiple sites, platforms, and ASL methods. There is a strong need for standardization of ASL data storage, including acquisition metadata. Recently, ASL-BIDS, the BIDS extension for ASL, was developed and released in BIDS 1.5.0. This manuscript provides an overview of the development and design choices of this first ASL-BIDS extension, which is mainly aimed at clinical ASL applications. Discussed are the structure of the ASL data, focussing on storage order of the ASL time series and implementation of calibration approaches, unit scaling, ASL-related BIDS fields, and storage of the labeling plane information. Additionally, an overview of ASL-BIDS compatible conversion and ASL analysis software and ASL example datasets in BIDS format is provided. We anticipate that large-scale adoption of ASL-BIDS will improve the reproducibility of ASL research.

Indexed as

BrainMagnetic Resonance ImagingNeuroimagingHumansReproducibility of ResultsSpin LabelsSpin Labels

Identifiers

PMID36068231
PMCPMC9448788

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.