Evidence map›Paper›PMID 36067319›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

KidA, a multi-PAS domain protein, tunes the period of the cyanobacterial circadian oscillator.

Soo Ji Kim, Chris Chi, Gopal Pattanayak, Aaron R Dinner, Michael J Rust

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. The Phenotypic Landscape of a Circadian Clock.bioRxiv : the preprint server for biology · 2026
    Article
  2. Frontiers in cell and developmental biology · 2025
    Review
  3. Temperature-dependent fold-switching mechanism of the circadian clock protein KaiB.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  5. Synchronization of the circadian clock to the environment tracked in real time.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Soo Ji KimDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637.ORCID 0000-0001-9898-341X
Chris ChiDepartment of Chemistry, The University of Chicago, Chicago, IL 60637.ORCID 0000-0001-9382-0910
Gopal PattanayakDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637.ORCID 0000-0002-6761-6577
Aaron R DinnerDepartment of Chemistry, The University of Chicago, Chicago, IL 60637.ORCID 0000-0001-8328-6427
Michael J RustDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL 60637.
University of Chicago · US

Funding

Coupling between Circadian Rhythms and Metaboilsm in CyanobacteriaR01GM107369 · NIGMS · UNIVERSITY OF CHICAGO · PI RUST, MICHAEL · 2013 to 2017
$1.5M
The Biochemistry of Clock Function in Fluctuating EnvironmentsR01GM135382 · NIGMS · UNIVERSITY OF CHICAGO · PI RUST, MICHAEL · 2020 to 2023
$1.3M
NIGMS NIH HHS R01 GM107369NIGMS NIH HHS R01 GM135382
6 · The paper itself

Abstract

The cyanobacterial clock presents a unique opportunity to understand the biochemical basis of circadian rhythms. The core oscillator, composed of the KaiA, KaiB, and KaiC proteins, has been extensively studied, but a complete picture of its connection to the physiology of the cell is lacking. To identify previously unknown components of the clock, we used KaiB locked in its active fold as bait in an immunoprecipitation/mass spectrometry approach. We found that the most abundant interactor, other than KaiC, was a putative diguanylate cyclase protein predicted to contain multiple Per-Arnt-Sim (PAS) domains, which we propose to name KidA. Here we show that KidA directly binds to the fold-switched active form of KaiB through its N-terminal PAS domains. We found that KidA shortens the period of the circadian clock both in vivo and in vitro and alters the ability of the clock to entrain to light-dark cycles. The dose-dependent effect of KidA on the clock period could be quantitatively recapitulated by a mathematical model in which KidA stabilizes the fold-switched form of KaiB, favoring rebinding to KaiC. Put together, our results show that the period and amplitude of the clock can be modulated by regulating the access of KaiB to the fold-switched form.

Indexed as

Bacterial ProteinsCircadian ClocksCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsSynechococcusPhosphorylationProtein DomainsBacterial ProteinsCircadian Rhythm Signaling Peptides and Proteinscircadian rhythmscyanobacteriadiguanylate cyclase

Identifiers

PMID36067319
PMCPMC9478674
OpenAlexW4294817721

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.