Evidence map›Paper›PMID 36067248›Full record

ArticlePLoS biology2022

A sensitive and specific genetically-encoded potassium ion biosensor for in vivo applications across the tree of life.

Sheng-Yi Wu, Yurong Wen, Nelson B C Serre, Cathrine Charlotte Heiede Laursen, Andrea Grostøl Dietz, Brian R Taylor, Mikhail Drobizhev, Rosana S Molina, Abhi Aggarwal, Vladimir Rancic and 11 more

Abstract read
In one paragraph

Article in PLoS biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Localizable Fluorescent Metal Ion Indicators With Tunable Colors.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Sheng-Yi WuDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Yurong WenDepartment of Biochemistry, University of Alberta, Edmonton, Alberta, Canada.
Nelson B C SerreDepartment of Experimental Plant Biology, Charles University, Prague, Czech Republic.
Cathrine Charlotte Heiede LaursenCenter for Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark.
Andrea Grostøl DietzCenter for Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark.
Brian R TaylorDepartment of Physics, University of California at San Diego, La Jolla, California, United States of America.
Mikhail DrobizhevDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, United States of America.
Rosana S MolinaDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, Montana, United States of America.
Abhi AggarwalJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America.
Vladimir RancicDepartment of Physiology, University of Alberta, Edmonton, Alberta, Canada.
Michael BeckerGM/CA@APS, X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois, United States of America.
Klaus BallanyiDepartment of Physiology, University of Alberta, Edmonton, Alberta, Canada.
Kaspar PodgorskiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America.
Hajime HiraseCenter for Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark.
Maiken NedergaardCenter for Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark.
Matyáš FendrychDepartment of Experimental Plant Biology, Charles University, Prague, Czech Republic.
M Joanne LemieuxDepartment of Biochemistry, University of Alberta, Edmonton, Alberta, Canada.
Daniel F EberlDepartment of Biology, University of Iowa, Iowa City, Iowa, United States of America.
Alan R KayDepartment of Biology, University of Iowa, Iowa City, Iowa, United States of America.
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Yi ShenDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID 0000-0003-4117-0279

Funding

User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI, JANET L. SMITH · 2020 to 2026
$34.3M
Quantitative Studies of Bacterial Growth PhysiologyR01GM095903 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HWA, TERENCE · 2011 to 2023
$3.8M
Resource for Multiphoton Characterization of Genetically-Encoded ProbesU24NS109107 · NINDS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Mikhail Drobizhev · 2018 to 2026
$2.2M
CIHR FS-154310Howard Hughes Medical InstituteNIGMS NIH HHS P30 GM138396NIGMS NIH HHS R01 GM095903NINDS NIH HHS U24 NS109107
6 · The paper itself

Abstract

Potassium ion (K+) plays a critical role as an essential electrolyte in all biological systems. Genetically-encoded fluorescent K+ biosensors are promising tools to further improve our understanding of K+-dependent processes under normal and pathological conditions. Here, we report the crystal structure of a previously reported genetically-encoded fluorescent K+ biosensor, GINKO1, in the K+-bound state. Using structure-guided optimization and directed evolution, we have engineered an improved K+ biosensor, designated GINKO2, with higher sensitivity and specificity. We have demonstrated the utility of GINKO2 for in vivo detection and imaging of K+ dynamics in multiple model organisms, including bacteria, plants, and mice.

Indexed as

Biosensing TechniquesFluorescence Resonance Energy TransferAnimalsIonsMicePotassiumIonsPotassium

Identifiers

PMID36067248
PMCPMC9481166

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.