Evidence map›Paper›PMID 36067165›Full record

ArticlePloS one2022

Detection of human feces pecovirus in newly diagnosed HIV patients in Brazil.

Rodrigo Lopes Sanz Duro, Robson Dos Santos Souza Marinho, Valquíria Lima Santana, Elis Muriel Marques Monti, Humberto Onias, Elaine Monteiro Matsuda, Ricardo Sobhie Diaz, Karina Rente Isidoro, Eric Delwart, Élcio Leal and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Rodrigo Lopes Sanz DuroLaboratório de Retrovirologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Robson Dos Santos Souza MarinhoLaboratório de Retrovirologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Valquíria Lima SantanaVigilância Epidemiológica, Prefeitura Municipal de Ferraz de Vasconcelos, São Paulo, Brazil.
Elis Muriel Marques MontiPrograma de IST/AIDS de Santo André/SP, Santo André, Brazil.
Humberto OniasPrograma de IST/AIDS de Santo André/SP, Santo André, Brazil.
Elaine Monteiro MatsudaPrograma de IST/AIDS de Santo André/SP, Santo André, Brazil.
Ricardo Sobhie DiazLaboratório de Retrovirologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Karina Rente IsidoroVigilância Epidemiológica, Prefeitura Municipal de Ferraz de Vasconcelos, São Paulo, Brazil.
Eric DelwartVitalant Research Institute, San Francisco, CA, United States of America.
Élcio LealUniversidade Federal do Pará, Belém, Pará, Brazil.
Shirley Vasconcelos KomninakisLaboratório de Retrovirologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.ORCID 0000-0001-7784-3418
Centro Universitário Fundação Santo André · BRUniversidade Federal de São Paulo · BRInstituto Biológico · BRUniversidade de São Paulo · BRUniversidade Federal do Pará · BRVitalant · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular single stranded DNA viruses (CRESS DNA) encoding a homologous replication-associated protein (REP) have been identified in most of eukaryotic groups. It is not clear yet the role in human diseases or details of the life cycle of these viruses. Recently, much interest has been raised in the evolutionary history of CRESS DNA owing to the increasing number of new sequences obtained by Next-Generation Sequencing (NGS) in distinct host species. In this study we describe two full-length CRESS DNA genomes obtained of two newly diagnosed HIV patients from São Paulo State, Brazil. The initial BLASTx search indicated that both sequences (named SP-FFB/2020 and SP-MJMS/2020) are highly similar (98%) to a previous CRESS DNA sequence detected in human fecal sample from Peru in 2016 and designated as pecovirus (Peruvian stool-associated circo-like virus). This study reported for the first time the Human feces pecovirus in the feces of two newly diagnosed HIV patients in Brazil. Our comparative analysis showed that although pecoviruses in South America share an identical genome structure they diverge and form distinct clades. Thus, we suggest the circulation of different species of pecoviruses in Latin America. Nevertheless, further studies must be done to examine the pathogenicity of this virus.

Indexed as

Genome, ViralHIV InfectionsBrazilDNA, Single-StrandedDNA, ViralDNA VirusesFecesHumansPhylogenyDNA, Single-StrandedDNA, Viral

Identifiers

PMID36067165
PMCPMC9447917
OpenAlexW4294795719

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.