Evidence map›Paper›PMID 36064790›Full record

ArticleNature communications2022

Allosteric inhibition of HTRA1 activity by a conformational lock mechanism to treat age-related macular degeneration.

Stefan Gerhardy, Mark Ultsch, Wanjian Tang, Evan Green, Jeffrey K Holden, Wei Li, Alberto Estevez, Chris Arthur, Irene Tom, Alexis Rohou and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Stefan GerhardyDepartment of Early Discovery Biochemistry, Genentech Inc., San Francisco, CA, USA.ORCID 0000-0003-1826-5907
Mark UltschDepartment of Structural Biology, Genentech Inc., San Francisco, CA, USA.
Wanjian TangDepartment of Early Discovery Biochemistry, Genentech Inc., San Francisco, CA, USA.ORCID 0000-0001-7374-6442
Evan GreenDepartment of Structural Biology, Genentech Inc., San Francisco, CA, USA.
Jeffrey K HoldenDepartment of Early Discovery Biochemistry, Genentech Inc., San Francisco, CA, USA.
Wei LiDepartment of Early Discovery Biochemistry, Genentech Inc., San Francisco, CA, USA.
Alberto EstevezDepartment of Structural Biology, Genentech Inc., San Francisco, CA, USA.
Chris ArthurDepartment of Structural Biology, Genentech Inc., San Francisco, CA, USA.
Irene TomDepartment of OMNI Biomarker Development, Genentech Inc., San Francisco, CA, USA.
Alexis RohouDepartment of Structural Biology, Genentech Inc., San Francisco, CA, USA.ORCID 0000-0002-3343-9621
Daniel KirchhoferDepartment of Early Discovery Biochemistry, Genentech Inc., San Francisco, CA, USA. dak@gene.com.ORCID 0000-0002-0975-4402
Gene Therapy Laboratory · FRMarker Gene Technologies (United States) · US

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
NIGMS NIH HHS P30 GM133894
6 · The paper itself

Abstract

The trimeric serine protease HTRA1 is a genetic risk factor associated with geographic atrophy (GA), a currently untreatable form of age-related macular degeneration. Here, we describe the allosteric inhibition mechanism of HTRA1 by a clinical Fab fragment, currently being evaluated for GA treatment. Using cryo-EM, X-ray crystallography and biochemical assays we identify the exposed LoopA of HTRA1 as the sole Fab epitope, which is approximately 30 Å away from the active site. The cryo-EM structure of the HTRA1:Fab complex in combination with molecular dynamics simulations revealed that Fab binding to LoopA locks HTRA1 in a non-competent conformational state, incapable of supporting catalysis. Moreover, grafting the HTRA1-LoopA epitope onto HTRA2 and HTRA3 transferred the allosteric inhibition mechanism. This suggests a conserved conformational lock mechanism across the HTRA family and a critical role of LoopA for catalysis, which was supported by the reduced activity of HTRA1-3 upon LoopA deletion or perturbation. This study reveals the long-range inhibition mechanism of the clinical Fab and identifies an essential function of the exposed LoopA for activity of HTRA family proteases.

Indexed as

High-Temperature Requirement A Serine Peptidase 1Macular DegenerationSerine EndopeptidasesCrystallography, X-RayEpitopesHumansImmunoglobulin Fab FragmentsEpitopesHigh-Temperature Requirement A Serine Peptidase 1HTRA1 protein, humanHTRA3 protein, humanImmunoglobulin Fab FragmentsSerine Endopeptidases

Identifiers

PMID36064790
PMCPMC9445180
OpenAlexW4294677406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.