Evidence map›Paper›PMID 36063869›Full record

ArticleDevelopmental biology2022

TRIM-NHL protein, NHL-2, modulates cell fate choices in the C. elegans germ line.

John L Brenner, Erin M Jyo, Ariz Mohammad, Paul Fox, Vovanti Jones, Elaine Mardis, Tim Schedl, Eleanor M Maine

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Biology · 2024
    Review
  3. Article
  4. DOT-1.1 (DOT1L) deficiency inBBA advances · 2023
    Article
  5. The role of RNA-binding proteins in orchestrating germline development inFrontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

John L BrennerDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Erin M JyoDepartment of Biology, Syracuse University, Syracuse, NY, 13210, USA.
Ariz MohammadDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Paul FoxDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Vovanti JonesDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Elaine MardisMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Tim SchedlDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, 63110, USA. Electronic address: ts@wustl.edu.
Eleanor M MaineDepartment of Biology, Syracuse University, Syracuse, NY, 13210, USA. Electronic address: emmaine@syr.edu.
Washington University in St. Louis · USSyracuse University · USJames S. McDonnell Foundation · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Stem cell versus meiotic fate decision in C. elegansR01GM100756 · NIGMS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM · 2012 to 2023
$4.2M
Stem cell proliferation / meiosis decision in C. elegansR01GM063310 · NIGMS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM · 2001 to 2008
$3.2M
NIGMS NIH HHS R01 GM063310NIGMS NIH HHS R01 GM100756NIH HHS P40 OD010440
6 · The paper itself

Abstract

Many tissues contain multipotent stem cells that are critical for maintaining tissue function. In Caenorhabditis elegans, germline stem cells allow gamete production to continue in adulthood. In the gonad, GLP-1/Notch signaling from the distal tip cell niche to neighboring germ cells activates a complex regulatory network to maintain a stem cell population. GLP-1/Notch signaling positively regulates production of LST-1 and SYGL-1 proteins that, in turn, interact with a set of PUF/FBF proteins to positively regulate the stem cell fate. We previously described sog (suppressor of glp-1 loss of function) and teg (tumorous enhancer of glp-1 gain of function) genes that limit the stem cell fate and/or promote the meiotic fate. Here, we show that sog-10 is allelic to nhl-2. NHL-2 is a member of the conserved TRIM-NHL protein family whose members can bind RNA and ubiquitinate protein substrates. We show that NHL-2 acts, at least in part, by inhibiting the expression of PUF-3 and PUF-11 translational repressor proteins that promote the stem cell fate. Two other negative regulators of stem cell fate, CGH-1 (conserved germline helicase) and ALG-5 (Argonaute protein), may work with NHL-2 to modulate the stem cell population. In addition, NHL-2 activity promotes the male germ cell fate in XX animals.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsArgonaute ProteinsCarrier ProteinsGerm CellsGlucagon-Like Peptide 1MaleReceptors, NotchRepressor ProteinsRNARNA-Binding ProteinsRNA NucleotidyltransferasesTranscription FactorsTripartite Motif ProteinsArgonaute ProteinsCaenorhabditis elegans ProteinsCarrier Proteinscgh-1 protein, C elegansGlucagon-Like Peptide 1LST-1 protein, C elegansNHL-2 protein, C elegansReceptors, NotchRepressor ProteinsRNARNA-Binding ProteinsRNA NucleotidyltransferasesTranscription FactorsTripartite Motif ProteinsC. elegansGermlineGLP-1/Notch signalingNHL-2Stem cell fateTRIM-NHL proteins

Identifiers

PMID36063869
PMCPMC9922029
OpenAlexW4294549697

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.