Evidence map›Paper›PMID 36063336›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Ultrafast Force-Clamp Spectroscopy of Microtubule-Binding Proteins.

Suvranta K Tripathy, Vladimir M Demidov, Ivan V Gonchar, Shaowen Wu, Fazly I Ataullakhanov, Ekaterina L Grishchuk

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Dissecting the pH Sensitivity of Kinesin-Driven Transport.The journal of physical chemistry. B · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Suvranta K TripathyDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Vladimir M DemidovDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ivan V GoncharCenter for Theoretical Problems of Physicochemical Pharmacology, Russian Academy of Sciences, Moscow, Russian Federation.
Shaowen WuDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Fazly I Ataullakhanov *Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ekaterina L Grishchuk *Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. gekate@pennmedicine.upenn.edu.

Funding

Biomechanics of molecular machines and multiscale non-linear systemsR35GM141747 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ekaterina L Grishchuk · 2021 to 2026
$3.7M
Molecular Biomechanics of Mitotic Chromosome SegregationR01GM125811 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GRISHCHUK, EKATERINA L · 2018 to 2020
$948k
NIGMS NIH HHS R01 GM125811NIGMS NIH HHS R35 GM141747
6 · The paper itself

Abstract

Optical trapping has been instrumental for deciphering translocation mechanisms of the force-generating cytoskeletal proteins. However, studies of the dynamic interactions between microtubules (MTs) and MT-associated proteins (MAPs) with no motor activity are lagging. Investigating the motility of MAPs that can diffuse along MT walls is a particular challenge for optical-trapping assays because thermally driven motions rely on weak and highly transient interactions. Three-bead, ultrafast force-clamp (UFFC) spectroscopy has the potential to resolve static and diffusive translocations of different MAPs with sub-millisecond temporal resolution and sub-nanometer spatial precision. In this report, we present detailed procedures for implementing UFFC, including setup of the optical instrument and feedback control, immobilization and functionalization of pedestal beads, and preparation of MT dumbbells. Example results for strong static interactions were generated using the Kinesin-7 motor CENP-E in the presence of AMP-PNP. Time resolution for MAP-MT interactions in the UFFC assay is limited by the MT dumbbell relaxation time, which is significantly longer than reported for analogous experiments using actin filaments. UFFC, however, provides a unique opportunity for quantitative studies on MAPs that glide along MTs under a dragging force, as illustrated using the kinetochore-associated Ska complex.

Indexed as

Carrier ProteinsMicrotubule ProteinsKinetochoresMicrotubule-Associated ProteinsMicrotubulesSpectrum AnalysisCarrier ProteinsMicrotubule-Associated ProteinsMicrotubule ProteinsBead functionalizationCENP-E kinesinKinetochoreMicrotubule-associated proteinsMicrotubule-dependent diffusionMolecular frictionSka complexUltrafast force-clamp spectroscopy

Identifiers

PMID36063336
PMCPMC9662813

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.