Evidence map›Paper›PMID 36063303›Full record

ArticlePhotosynthesis research2023

The role of the local environment on the structural heterogeneity of carotenoid β-ionone rings.

Roman Y Pishchalnikov, Igor A Yaroshevich, Dmitry V Zlenko, Georgy V Tsoraev, Evgenii M Osipov, Vladimir A Lazarenko, Evgenia Yu Parshina, Denis D Chesalin, Nikolai N Sluchanko, Eugene G Maksimov

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Article in Photosynthesis research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Light-induced infrared difference spectroscopy on three different forms of orange carotenoid protein: focus on carotenoid vibrations.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Roman Y PishchalnikovProkhorov General Physics Institute of the Russian Academy of Sciences, Vavilov Str., 38, Moscow, Russia, 119991. rpishchal@kapella.gpi.ru.ORCID http://orcid.org/0000-0002-5955-6092
Igor A YaroshevichDepartment of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Dmitry V ZlenkoDepartment of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Georgy V TsoraevDepartment of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Evgenii M OsipovLaboratory for Biocrystallography, KU Leuven, Herestraat 49, 3000, Leuven, Belgium.
Vladimir A LazarenkoNational Research Center "Kurchatov Institute", 1 Akademika Kurchatova Pl., Moscow, Russia, 123182.
Evgenia Yu ParshinaDepartment of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Denis D ChesalinProkhorov General Physics Institute of the Russian Academy of Sciences, Vavilov Str., 38, Moscow, Russia, 119991.
Nikolai N SluchankoA.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia, 119071.
Eugene G MaksimovDepartment of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Lomonosov Moscow State University · RUProkhorov General Physics Institute · RUA N Bach Institute of Biochemistry · RUKU Leuven · BEKurchatov Institute · RU

Funding

Ministry of Science and Higher education of the Russian Federation 075-15-2021-1354Russian Foundation for Basic Research 20-54-12018Russian Science Foundation 22-21-00905
6 · The paper itself

Abstract

Our analysis of the X-ray crystal structure of canthaxanthin (CAN) showed that its ketolated β-ionone rings can adopt two energetically equal, but structurally distinct puckers. Quantum chemistry calculations revealed that the potential energy surface of the β-ionone ring rotation over the plane of the conjugated π-system in carotenoids depends on the pucker state of the β-ring. Considering different pucker states and β-ionone ring rotation, we found six separate local minima on the potential energy surface defining the geometry of the keto-β-ionone ring-two cis and one trans orientation for each of two pucker states. We observed a small difference in energy and no difference in relative orientation for the cis-minima, but a pronounced difference for the position of trans-minimum in alternative pucker configurations. An energetic advantage of β-ionone ring rotation from a specific pucker type can reach up to 8 kJ/mol ([Formula: see text]). In addition, we performed the simulation of linear absorption of CAN in hexane and in a unit cell of the CAN crystal. The electronic energies of [Formula: see text] transition were estimated both for the CAN monomer and in the CAN crystal. The difference between them reached [Formula: see text], which roughly corresponds to the energy gap between A and B pucker states predicted by theoretical estimations. Finally, we have discussed the importance of such effects for biological systems whose local environment determines conformational mobility, and optical/functional characteristics of carotenoid.

Indexed as

CarotenoidsNorisoprenoidsCanthaxanthinMolecular Conformationbeta-iononeCanthaxanthinCarotenoidsNorisoprenoidsCanthaxanthinDifferential evolutionLinear optical responseModelingMolecular dynamicsMultimode Brownian oscillator modelPucker states

Identifiers

PMID36063303
OpenAlexW4294671368

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.