Evidence map›Paper›PMID 36063057›Full record

ArticlePlant physiology2022

PHYTOCHROME-INTERACTING FACTOR 4/HEMERA-mediated thermosensory growth requires the Mediator subunit MED14.

Abhishesh Bajracharya, Jing Xi, Karlie F Grace, Eden E Bayer, Chloe A Grant, Caroline H Clutton, Scott R Baerson, Ameeta K Agarwal, Yongjian Qiu

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. PIF transcription factors-versatile plant epigenome landscapers.Frontiers in epigenetics and epigenomics · 2024
    Review
  6. Light signaling as cellular integrator of multiple environmental cues in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Abhishesh BajracharyaDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.ORCID 0000-0002-3114-2533
Jing XiNatural Products Utilization Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Oxford, Mississippi, USA.ORCID 0000-0003-0881-2356
Karlie F GraceDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.
Eden E BayerDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.
Chloe A GrantDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.
Caroline H CluttonDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.ORCID 0000-0003-4279-8068
Scott R BaersonNatural Products Utilization Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Oxford, Mississippi, USA.ORCID 0000-0002-0756-6379
Ameeta K AgarwalNational Center for Natural Products Research, School of Pharmacy, University of Mississippi, Oxford, Mississippi, USA.ORCID 0000-0001-5008-0940
Yongjian QiuDepartment of Biology, University of Mississippi, Oxford, Mississippi 38677, USA.ORCID 0000-0002-1799-6305
University of Mississippi · USAgricultural Research Service · US

Funding

Tracking Glycosylation State with Fluorinated Glycosides ProbesP20GM130460 · NIGMS · UNIVERSITY OF MISSISSIPPI · PI Joshua S Sharp · 2020 to 2026
$17.9M
Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
NIGMS NIH HHS P20 GM130460NIGMS NIH HHS R01 GM087388
6 · The paper itself

Abstract

While moderately elevated ambient temperatures do not trigger stress responses in plants, they do substantially stimulate the growth of specific organs through a process known as thermomorphogenesis. The basic helix-loop-helix transcription factor PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) plays a central role in regulating thermomorphogenetic hypocotyl elongation in various plant species, including Arabidopsis (Arabidopsis thaliana). Although it is well known that PIF4 and its co-activator HEMERA (HMR) promote plant thermosensory growth by activating genes involved in the biosynthesis and signaling of the phytohormone auxin, the detailed molecular mechanism of such transcriptional activation is not clear. In this report, we investigated the role of the Mediator complex in the PIF4/HMR-mediated thermoresponsive gene expression. Through the characterization of various mutants of the Mediator complex, a tail subunit named MED14 was identified as an essential factor for thermomorphogenetic hypocotyl growth. MED14 was required for the thermal induction of PIF4 target genes but had a marginal effect on the levels of PIF4 and HMR. Further transcriptomic analyses confirmed that the expression of numerous PIF4/HMR-dependent, auxin-related genes required MED14 at warm temperatures. Moreover, PIF4 and HMR physically interacted with MED14 and both were indispensable for the association of MED14 with the promoters of these thermoresponsive genes. While PIF4 did not regulate MED14 levels, HMR was required for the transcript abundance of MED14. Taken together, these results unveil an important thermomorphogenetic mechanism, in which PIF4 and HMR recruit the Mediator complex to activate auxin-related growth-promoting genes when plants sense moderate increases in ambient temperature.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantHypocotylIndoleacetic AcidsMediator ComplexTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsHMR protein, ArabidopsisIndoleacetic AcidsMediator ComplexPhytochromeTranscription Factors

Identifiers

PMID36063057
PMCPMC9706435
OpenAlexW4294670349

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.