Evidence map›Paper›PMID 36061322›Full record

ArticleJournal of microbiology & biology education2022

Methylothon: a Versatile Course-Based High School Research Experience in Microbiology and Bioinformatics with Pink Bacteria.

Peyton A Jones, David Frischer, Shannon Mueller, Thomas Le, Anya Schwanes, Alekhya Govindaraju, Katie Shalvarjian, Jean-Baptiste Leducq, Christopher J Marx, N Cecilia Martinez-Gomez and 1 more

Abstract read
In one paragraph

Article in Journal of microbiology & biology education, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Peyton A JonesIntegrative Biology Program, Harvard University, Cambridge, Massachusetts, USA.
David FrischerAbraham Lincoln High School, San Francisco, California, USA.
Shannon MuellerBerkeley High School, Berkeley, California, USA.
Thomas LeMolecular and Cell Biology Program, University of California, Berkeley, Berkeley, California, USA.
Anya SchwanesGalileo Academy of Science and Technology, San Francisco, California, USA.
Alekhya GovindarajuPlant and Microbial Biology Program, University of California, Berkeley, Berkeley, California, USA.
Katie ShalvarjianPlant and Microbial Biology Program, University of California, Berkeley, Berkeley, California, USA.
Jean-Baptiste LeducqDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.
Christopher J MarxDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.ORCID https://orcid.org/0000-0002-5189-4580
N Cecilia Martinez-GomezDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.
Jessica A LeeLaboratory for Research in Complex Systems, San Francisco, California, USA.ORCID https://orcid.org/0000-0002-0250-4064

Funding

Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
NIGMS NIH HHS T32 GM132022
6 · The paper itself

Abstract

Methylothon is an inquiry-based high school learning module in microbial ecology, molecular biology, and bioinformatics that centers around pink-pigmented plant-associated methylotrophic bacteria. Here, we present an overview of the module's learning goals, describe course resources (available for public use at http://methylothon.com), and relate lessons learned from adapting Methylothon for remote learning during the pandemic in spring of 2021. This curriculum description is intended not only for instructors but also for microbial ecology researchers with an interest in conducting K-12 outreach. The original in-person version of the module allows students to isolate their own strains of methylotrophic bacteria from plants they sample from the environment, to identify these using PCR, sequencing, and phylogenetic analysis, and to contribute their strains to original research in a university lab. The adapted version strengthens the focus on bioinformatics and increases its flexibility and accessibility by making the lab portion optional and adopting free web-based tools. Student feedback and graded assignments from spring 2021 revealed that the lesson was especially effective at introducing the concepts of BLAST and phylogenetic trees and that students valued and felt inspired by the opportunity to conduct hands-on work and to participate in community science.

Indexed as

bioinformaticscommunity sciencecourse-based research experiencemethylotrophymicrobial ecologyproject-based learning

Identifiers

PMID36061322
PMCPMC9429956

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.