Evidence map›Paper›PMID 36060279›Full record

ArticleFrontiers in cellular neuroscience2022

Profiling mouse cochlear cell maturation using 10× Genomics single-cell transcriptomics.

Zhenhang Xu, Shu Tu, Caroline Pass, Yan Zhang, Huizhan Liu, Jack Diers, Yusi Fu, David Z Z He, Jian Zuo

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  12. Visualization of the Spiral Ganglion Neuron in Vivo Using a NovelAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  13. Article
  14. Article
  15. Pharmacological Approaches to Hearing Loss.Pharmacological reviews · 2024
    Review
  16. Article
  17. Review
  18. Article
  19. KSR1 Knockout Mouse Model Demonstrates MAPK Pathway's Key Role in Cisplatin- and Noise-induced Hearing Loss.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Zhenhang XuDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Shu TuDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Caroline PassDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Yan ZhangDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Huizhan LiuDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Jack DiersDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Yusi FuLynch Comprehensive Cancer Research Center, Creighton University School of Medicine, Omaha, NE, United States.
David Z Z HeDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Jian ZuoDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Creighton University · USCancer Research Center · US

Funding

Understanding the progression of hearing loss in an endolymphatic hydrops modelP20GM139762 · NIGMS · CREIGHTON UNIVERSITY · PI Hui Hong · 2021 to 2026
$16.1M
NIGMS NIH HHS P20 GM139762
6 · The paper itself

Abstract

Juvenile and mature mouse cochleae contain various low-abundant, vulnerable sensory epithelial cells embedded in the calcified temporal bone, making it challenging to profile the dynamic transcriptome changes of these cells during maturation at the single-cell level. Here we performed the 10x Genomics single-cell RNA sequencing (scRNA-seq) of mouse cochleae at postnatal days 14 (P14) and 28. We attained the transcriptomes of multiple cell types, including hair cells, supporting cells, spiral ganglia, stria fibrocytes, and immune cells. Our hair cell scRNA-seq datasets are consistent with published transcripts from bulk RNA-seq. We also mapped known deafness genes to corresponding cochlear cell types. Importantly, pseudotime trajectory analysis revealed that inner hair cell maturation peaks at P14 while outer hair cells continue development until P28. We further identified and confirmed a long non-coding RNA gene

Indexed as

C57B/L6 mousecochlear cellscochlear maturationhair celllncRNAscRNA-seqtranscriptome

Identifiers

PMID36060279
PMCPMC9434313
OpenAlexW4293826751

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.