Evidence map›Paper›PMID 36059544›Full record

ArticleFrontiers in immunology2022

Dynamic risk prediction of BK polyomavirus reactivation after renal transplantation.

Yiling Fang, Chengfeng Zhang, Yuchen Wang, Zhiyin Yu, Zhouting Wu, Yi Zhou, Ziyan Yan, Jia Luo, Renfei Xia, Wenli Zeng and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
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  5. Association ofCurrent drug metabolism · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Yiling FangDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Chengfeng ZhangDepartment of Biostatistics, School of Public Health (Guangdong Provincial Key Laboratory of Tropical Disease Research), Southern Medical University, Guangzhou, China.
Yuchen WangDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Zhiyin YuDepartment of Biostatistics, School of Public Health (Guangdong Provincial Key Laboratory of Tropical Disease Research), Southern Medical University, Guangzhou, China.
Zhouting WuDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Yi ZhouDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Ziyan YanDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Jia LuoDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Renfei XiaDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Wenli ZengDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Wenfeng DengDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Jian XuDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Zheng ChenDepartment of Biostatistics, School of Public Health (Guangdong Provincial Key Laboratory of Tropical Disease Research), Southern Medical University, Guangzhou, China.
Yun MiaoDepartment of Transplantation, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Southern Medical University · CNNanfang Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: To construct a dynamic prediction model for BK polyomavirus (BKV) reactivation during the early period after renal transplantation and to provide a statistical basis for the identification of and intervention for high-risk populations. Methods: A retrospective study of 312 first renal allograft recipients with strictly punctual follow-ups was conducted between January 2015 and March 2022. The covariates were screened using univariable time-dependent Cox regression, and those with P<0.1 were included in the dynamic and static analyses. We constructed a prediction model for BKV reactivation from 2.5 to 8.5 months after renal transplantation using dynamic Cox regression based on the landmarking method and evaluated its performance using the area under the curve (AUC) value and Brier score. Monte-Carlo cross-validation was done to avoid overfitting. The above evaluation and validation process were repeated in the static model (Cox regression model) to compare the performance. Two patients were presented to illustrate the application of the dynamic model. Results: We constructed a dynamic prediction model with 18 covariates that could predict the probability of BKV reactivation from 2.5 to 8.5 months after renal transplantation. Elder age, basiliximab combined with cyclophosphamide for immune induction, acute graft rejection, higher body mass index, estimated glomerular filtration rate, urinary protein level, urinary leukocyte level, and blood neutrophil count were positively correlated with BKV reactivation, whereas male sex, higher serum albumin level, and platelet count served as protective factors. The AUC value and Brier score of the static model were 0.64 and 0.14, respectively, whereas those of the dynamic model were 0.79 ± 0.05 and 0.08 ± 0.01, respectively. In the cross-validation, the AUC values of the static and dynamic models decreased to 0.63 and 0.70 ± 0.03, respectively, whereas the Brier score changed to 0.11 and 0.09 ± 0.01, respectively. Conclusion: Dynamic Cox regression based on the landmarking method is effective in the assessment of the risk of BKV reactivation in the early period after renal transplantation and serves as a guide for clinical intervention.

Indexed as

BK VirusKidney TransplantationPolyomavirus InfectionsTumor Virus InfectionsAgedHumansMaleRetrospective StudiesBK polyomavirusdynamic Cox regressionpredictionreactivationrenal transplantation

Identifiers

PMID36059544
PMCPMC9428263
OpenAlexW4292295551

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.