Evidence map›Paper›PMID 36057561›Full record

ArticleBMC genomic data2022

Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume.

Pádraic J Flood, Minou Nowrousian, Bruno Huettel, Christian Woehle, Kerstin Becker, Tassilo Erik Wollenweber, Dominik Begerow, Christopher Grefen

Abstract read
In one paragraph

Article in BMC genomic data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. WildPlants (Basel, Switzerland) · 2024
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pádraic J Flood *infarm - Indoor Urban Farming B.V., Wageningen, The Netherlands. padraic8@gmail.com.
Minou Nowrousian *Lehrstuhl für Molekulare und Zelluläre Botanik, Ruhr-Universität Bochum, Universitätsstr. 150, 44801, Bochum, Germany. minou.nowrousian@rub.de.ORCID 0000-0003-0075-6695
Bruno HuettelMax-Planck-Genome-centre Cologne, Max Planck Institute for Plant Breeding, Carl-von-Linné-Weg 10, 50829, Köln, Germany.
Christian WoehleMax-Planck-Genome-centre Cologne, Max Planck Institute for Plant Breeding, Carl-von-Linné-Weg 10, 50829, Köln, Germany.
Kerstin BeckerGenomics & Transcriptomics Labor, Biologisch-Medizinisches Forschungszentrum, and West German Genome Center, Heinrich-Heine-Universität Düsseldorf, Universitätsstr. 1, 40225, Düsseldorf, Germany.
Tassilo Erik WollenweberGenomics & Transcriptomics Labor, Biologisch-Medizinisches Forschungszentrum, and West German Genome Center, Heinrich-Heine-Universität Düsseldorf, Universitätsstr. 1, 40225, Düsseldorf, Germany.
Dominik BegerowLehrstuhl für Evolution der Pflanzen und Pilze, Ruhr-Universität Bochum, Universitätsstr. 150, 44801, Bochum, Germany. dominik.begerow@rub.de.
Christopher GrefenLehrstuhl für Molekulare und Zelluläre Botanik, Ruhr-Universität Bochum, Universitätsstr. 150, 44801, Bochum, Germany. christopher.grefen@rub.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesLathyrus tuberosus is a nitrogen-fixing member of the Fabaceae which forms protein-rich tubers. To aid future domestication programs for this legume plant and facilitate evolutionary studies of tuber formation, we have generated a draft genome assembly based on Pacific Biosciences sequence reads. DATA DESCRIPTION: Genomic DNA from L. tuberosus was sequenced with PacBio's HiFi sequencing chemistry generating 12.8 million sequence reads with an average read length of 14 kb (approximately 180 Gb of sequence data). The reads were assembled to give a draft genome of 6.8 Gb in 1353 contigs with an N50 contig length of 11.1 Mb. The GC content of the genome assembly was 38.3%. BUSCO analysis of the genome assembly indicated a genome completeness of at least 96%. The genome sequence will be a valuable resource, for example, in assessing genomic consequences of domestication efforts and developing marker sets for breeding programs. The L. tuberosus genome will also aid in the analysis of the evolutionary history of plants within the nitrogen-fixing Fabaceae family and in understanding the molecular basis of tuber evolution.

Indexed as

FabaceaeLathyrusGenomeNitrogenPlant BreedingNitrogenFabaceaeGenome sequencingLathyrus tuberosusPacBio sequencingtuber formation

Identifiers

PMID36057561
PMCPMC9441078

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.