Evidence map›Paper›PMID 36056356›Full record

ArticleRespiratory research2022

Early transcriptional responses of bronchial epithelial cells to whole cigarette smoke mirror those of in-vivo exposed human bronchial mucosa.

Anne M van der Does, Rashad M Mahbub, Dennis K Ninaber, Senani N H Rathnayake, Wim Timens, Maarten van den Berge, Hananeh Aliee, Fabian J Theis, Martijn C Nawijn, Pieter S Hiemstra and 1 more

Open access · goldAbstract read
In one paragraph

Article in Respiratory research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
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  7. Review
  8. Multifaceted roles of mitochondria in asthma.Cell biology and toxicology · 2024
    Review
  9. Article
  10. IL-33 Expression Is Lower in Current Smokers at both Transcriptomic and Protein Levels.American journal of respiratory and critical care medicine · 2023
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Anne M van der Does *Department of Pulmonology, Leiden University Medical Center, Leiden, The Netherlands.
Rashad M Mahbub *Respiratory Bioinformatics and Molecular Biology (RBMB), School of Life Sciences, University of Technology Sydney, Sydney, Australia.
Dennis K NinaberDepartment of Pulmonology, Leiden University Medical Center, Leiden, The Netherlands.
Senani N H RathnayakeRespiratory Bioinformatics and Molecular Biology (RBMB), School of Life Sciences, University of Technology Sydney, Sydney, Australia.
Wim TimensDepartment of Pathology and Medical Biology Diseases, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Maarten van den BergeUniversity of Groningen, University Medical Center Groningen, Groningen Research Institute for Asthma and COPD, Groningen, The Netherlands.
Hananeh AlieeInstitute of Computational Biology, Helmholtz Centre, Munich, Germany.
Fabian J TheisInstitute of Computational Biology, Helmholtz Centre, Munich, Germany.
Martijn C NawijnDepartment of Pathology and Medical Biology Diseases, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Pieter S Hiemstra *Department of Pulmonology, Leiden University Medical Center, Leiden, The Netherlands.
Alen Faiz *Respiratory Bioinformatics and Molecular Biology (RBMB), School of Life Sciences, University of Technology Sydney, Sydney, Australia. alen.faiz@uts.edu.au.
Leiden University Medical Center · NLHelmholtz Zentrum München · DEUniversity Medical Center Groningen · NLUniversity of Groningen · NLUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDespite the well-known detrimental effects of cigarette smoke (CS), little is known about the complex gene expression dynamics in the early stages after exposure. This study aims to investigate early transcriptomic responses following CS exposure of airway epithelial cells in culture and compare these to those found in human CS exposure studies.

methodsPrimary bronchial epithelial cells (PBEC) were differentiated at the air-liquid interface (ALI) and exposed to whole CS. Bulk RNA-sequencing was performed at 1 h, 4 h, and 24 h hereafter, followed by differential gene expression analysis. Results were additionally compared to data retrieved from human CS studies.

resultsALI-PBEC gene expression in response to CS was most significantly changed at 4 h after exposure. Early transcriptomic changes (1 h, 4 h post CS exposure) were related to oxidative stress, xenobiotic metabolism, higher expression of immediate early genes and pro-inflammatory pathways (i.e., Nrf2, AP-1, AhR). At 24 h, ferroptosis-associated genes were significantly increased, whereas PRKN, involved in removing dysfunctional mitochondria, was downregulated. Importantly, the transcriptome dynamics of the current study mirrored in-vivo human studies of acute CS exposure, chronic smokers, and inversely mirrored smoking cessation.

conclusionThese findings show that early after CS exposure xenobiotic metabolism and pro-inflammatory pathways were activated, followed by activation of the ferroptosis-related cell death pathway. Moreover, significant overlap between these transcriptomic responses in the in-vitro model and human in-vivo studies was found, with an early response of ciliated cells. These results provide validation for the use of ALI-PBEC cultures to study the human lung epithelial response to inhaled toxicants.

Indexed as

Cigarette SmokingXenobioticsBronchiEpithelial CellsHumansMucous MembraneNicotianaXenobiotics

Identifiers

PMID36056356
PMCPMC9440516
OpenAlexW4294301079

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.