Evidence map›Paper›PMID 36056028›Full record

ArticleNature communications2022

Rtt105 regulates RPA function by configurationally stapling the flexible domains.

Sahiti Kuppa, Jaigeeth Deveryshetty, Rahul Chadda, Jenna R Mattice, Nilisha Pokhrel, Vikas Kaushik, Angela Patterson, Nalini Dhingra, Sushil Pangeni, Marisa K Sadauskas and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Rtt105 stimulates Rad51-ssDNA assembly and orchestrates Rad51 and RPA actions to promote homologous recombination repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 1 country.

Sahiti KuppaDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA.
Jaigeeth Deveryshetty *Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA.
Rahul Chadda *Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA.
Jenna R Mattice *Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, USA.
Nilisha PokhrelDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.
Vikas KaushikDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA.
Angela PattersonDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, USA.
Nalini DhingraMolecular Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0003-0949-883X
Sushil PangeniDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.
Marisa K SadauskasDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA.
Sajad ShiekhDepartment of Physics, Kent State University, Kent, OH, 44242, USA.ORCID 0000-0002-8400-4679
Hamza BalciDepartment of Physics, Kent State University, Kent, OH, 44242, USA.ORCID 0000-0002-0273-4871
Taekjip HaDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.ORCID 0000-0003-2195-6258
Xiaolan ZhaoMolecular Biology Department, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-8302-6905
Brian BothnerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, USA.
Edwin AntonyDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, 63104, USA. edwin.antony@health.slu.edu.ORCID 0000-0002-1888-054X
Saint Louis University · USMontana State University · USKent State University · USMarquette University · USMemorial Sloan Kettering Cancer Center · USHoward Hughes Medical Institute · USJohns Hopkins University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Research Core (Developmental Research Project Program)P20GM103474 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Jeffrey Good · 2012 to 2026
$60.0M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Single Molecule Studies of Nucleic Acids RemodelingR35GM122569 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Taekjip Ha · 2017 to 2026
$3.5M
Regulation of Replication and Recombination IntermediatesR01GM131058 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI ZHAO, XIAOLAN · 2019 to 2022
$1.6M
Supplement Request for a FluorometerR01GM133967 · NIGMS · SAINT LOUIS UNIVERSITY · PI ANTONY, EDWIN · 2019 to 2023
$1.5M
Mechanisms of DNA hand-off during lesion repair in BER and NER supplementR01GM130746 · NIGMS · SAINT LOUIS UNIVERSITY · PI ANTONY, EDWIN · 2019 to 2022
$1.4M
Lumicks C-Trap for a Core FacilityS10OD025221 · OD · JOHNS HOPKINS UNIVERSITY · PI KUO, SCOT CHARLES · 2019 to 2019
$597k
Acquisition of an Optima Analytical UltracentrifugeS10OD030343 · OD · SAINT LOUIS UNIVERSITY · PI ANTONY, EDWIN · 2021 to 2021
$515k
Influence of small molecules on G-quadruplex stability, folding kinetics, and interactions with proteinsR15GM123443 · NIGMS · KENT STATE UNIVERSITY · PI BALCI, HAMZA · 2018 to 2018
$438k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NIGMS NIH HHS P20 GM103474NIGMS NIH HHS R01 GM130746NIGMS NIH HHS R01 GM131058NIGMS NIH HHS R01 GM133967NIGMS NIH HHS R15 GM123443NIGMS NIH HHS R35 GM122569NIGMS NIH HHS R35 GM145260NIH HHS S10 OD025221NIH HHS S10 OD030343
6 · The paper itself

Abstract

Replication Protein A (RPA) is a heterotrimeric complex that binds to single-stranded DNA (ssDNA) and recruits over three dozen RPA-interacting proteins to coordinate multiple aspects of DNA metabolism including DNA replication, repair, and recombination. Rtt105 is a molecular chaperone that regulates nuclear localization of RPA. Here, we show that Rtt105 binds to multiple DNA binding and protein-interaction domains of RPA and configurationally staples the complex. In the absence of ssDNA, Rtt105 inhibits RPA binding to Rad52, thus preventing spurious binding to RPA-interacting proteins. When ssDNA is available, Rtt105 promotes formation of high-density RPA nucleoprotein filaments and dissociates during this process. Free Rtt105 further stabilizes the RPA-ssDNA filaments by inhibiting the facilitated exchange activity of RPA. Collectively, our data suggest that Rtt105 sequesters free RPA in the nucleus to prevent untimely binding to RPA-interacting proteins, while stabilizing RPA-ssDNA filaments at DNA lesion sites.

Indexed as

Saccharomyces cerevisiaeDNA ReplicationDNA, Single-StrandedProtein BindingRecombination, GeneticReplication Protein ARNA-Binding ProteinsSaccharomyces cerevisiae ProteinsDNA, Single-StrandedReplication Protein ARFA1 protein, S cerevisiaeRNA-Binding ProteinsRTT105 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID36056028
PMCPMC9440123
OpenAlexW4294242824

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.