Evidence map›Paper›PMID 36054333›Full record

ArticleHuman mutation2022

CIC missense variants contribute to susceptibility for spina bifida.

Xiao Han, Xuanye Cao, Vanessa Aguiar-Pulido, Wei Yang, Menuka Karki, Paula Andrea Pimienta Ramirez, Robert M Cabrera, Ying Linda Lin, Bogdan J Wlodarczyk, Gary M Shaw and 4 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Xiao HanDepartment of Reproductive Medicine Center, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, People's Republic of China.ORCID 0000-0001-6749-1877
Xuanye CaoCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-2181-3540
Vanessa Aguiar-PulidoCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, New York, USA.ORCID 0000-0001-5248-6944
Wei YangDepartment of Computer Science, University of Miami, Coral Gables, Florida, USA.ORCID 0000-0002-2979-3425
Menuka KarkiCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-1234-0024
Paula Andrea Pimienta RamirezCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.
Robert M CabreraCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-2998-0482
Ying Linda LinCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.
Bogdan J WlodarczykCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-8965-9957
Gary M ShawDepartment of Computer Science, University of Miami, Coral Gables, Florida, USA.
M Elizabeth RossCenter for Neurogenetics, Brain and Mind Research Institute, Weill Cornell Medicine, New York, New York, USA.ORCID 0000-0001-6440-8089
Cuilian ZhangDepartment of Reproductive Medicine Center, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, People's Republic of China.ORCID 0000-0002-5210-5272
Richard H FinnellCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-5962-8754
Yunping LeiCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0003-1504-0884
Baylor College of Medicine · USUniversity of Miami · USCornell University · USZhengzhou University · CN

Funding

Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Casey W Wright · 2019 to 2026
$14.7M
Risk Genes and Environment Interactions in NTDsP01HD067244 · NICHD · WEILL MEDICAL COLL OF CORNELL UNIV · PI ROSS, MARGARET ELIZABETH · 2011 to 2020
$12.6M
Epigenome Interactions in Complex Neurogenetic DisordersR01NS076465 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI MASON, CHRISTOPHER EDWARD, ROSS, MARGARET ELIZABETH · 2011 to 2015
$5.8M
California Center of the NBDPS - Finding Causes and Preventives of Birth DefectsU01DD000489 · DD · STANFORD UNIVERSITY · PI SHAW, GARY C. · 2009 to 2013
$4.3M
Training Program in Developmental BiologyT32HD060600 · NICHD · WEILL MEDICAL COLL OF CORNELL UNIV · PI BAO, ZHIRONG, STUHLMANN, HEIDI · 2010 to 2024
$3.5M
Role of Slc25a32 and Its Interaction with Lrp6 in the Etiology of Neural Tube DefectsR01HD100535 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI FINNELL, RICHARD H., LEI, YUNPING · 2020 to 2024
$2.9M
Training in Precision Environmental Health SciencesT32ES027801 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2018 to 2026
$2.8M
Folic Acid, Parental Mutation Rates and the Risk for Neural Tube DefectsR01HD081216 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI FINNELL, RICHARD H., LEI, YUNPING · 2015 to 2019
$2.5M
NCBDD CDC HHS U01 DD000489NCBDD CDC HHS U01 DD001226NICHD NIH HHS P01 HD067244NICHD NIH HHS R01 HD081216NICHD NIH HHS R01 HD100535NICHD NIH HHS T32 HD060600NIEHS NIH HHS T32 ES027801NINDS NIH HHS R01 NS076465
6 · The paper itself

Abstract

Neural tube defects (NTDs) are congenital malformations resulting from abnormal embryonic development of the brain, spine, or spinal column. The genetic etiology of human NTDs remains poorly understood despite intensive investigation. CIC, homolog of the Capicua transcription repressor, has been reported to interact with ataxin-1 (ATXN1) and participate in the pathogenesis of spinocerebellar ataxia type 1. Our previous study demonstrated that CIC loss of function (LoF) variants contributed to the cerebral folate deficiency syndrome by downregulating folate receptor 1 (FOLR1) expression. Given the importance of folate transport in neural tube formation, we hypothesized that CIC variants could contribute to increased risk for NTDs by depressing embryonic folate concentrations. In this study, we examined CIC variants from whole-genome sequencing (WGS) data of 140 isolated spina bifida cases and identified eight missense variants of CIC gene. We tested the pathogenicity of the observed variants through multiple in vitro experiments. We determined that CIC variants decreased the FOLR1 protein level and planar cell polarity (PCP) pathway signaling in a human cell line (HeLa). In a murine cell line (NIH3T3), CIC loss of function variants downregulated PCP signaling. Taken together, this study provides evidence supporting CIC as a risk gene for human NTD.

Indexed as

Neural Tube DefectsRepressor ProteinsSpinal DysraphismAnimalsFemaleFolate Receptor 1Folic AcidHeLa CellsHumansMiceMutation, MissenseNIH 3T3 CellsPregnancyCIC protein, humanFolate Receptor 1Folic AcidFOLR1 protein, humanRepressor ProteinsCICFOLR1NTDsPCP signaling pathway

Identifiers

PMID36054333
PMCPMC9772115
OpenAlexW4294295932

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.