Evidence map›Paper›PMID 36054310›Full record

ArticleEnvironmental microbiology2022

ProX from marine Synechococcus spp. show a sole preference for glycine-betaine with differential affinity between ecotypes.

Benjamin A Ford, Pramita Ranjit, Bridget C Mabbutt, Ian T Paulsen, Bhumika S Shah

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Benjamin A FordSchool of Natural Sciences, Macquarie University, Sydney, Australia.ORCID 0000-0002-4881-1334
Pramita RanjitSchool of Natural Sciences, Macquarie University, Sydney, Australia.
Bridget C MabbuttSchool of Natural Sciences, Macquarie University, Sydney, Australia.
Ian T PaulsenSchool of Natural Sciences, Macquarie University, Sydney, Australia.ORCID 0000-0001-9015-9418
Bhumika S ShahSchool of Natural Sciences, Macquarie University, Sydney, Australia.ORCID 0000-0001-8968-440X
Macquarie University · AUARC Centre of Excellence in Synthetic Biology · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osmotic stress, caused by high or fluctuating salt concentrations, is a crucial abiotic factor affecting microbial growth in aquatic habitats. Many organisms utilize common responses to osmotic stress, generally requiring active extrusion of toxic inorganic ions and accumulation of compatible solutes to protect cellular machinery. We heterologously expressed and purified predicted osmoprotectant, proline/glycine betaine-binding proteins (ProX) from two phylogenetically distinct Synechococcus spp. MITS9220 and WH8102. Homologues of this protein are conserved only among Prochlorococcus LLIV and Synechococcus clade I, III and CRD1 strains. Our biophysical characterization show Synechococcus ProX exists as a dimer, with specificity solely for glycine betaine but not to other osmoprotectants tested. We discovered that MITS9220_ProX has a 10-fold higher affinity to glycine betaine than WH8102_ProX, which is further elevated (24-fold) in high salt conditions. The stronger affinity and effect of ionic strength on MITS9220_ProX glycine betaine binding but not on WH8102_ProX alludes to a novel regulatory mechanism, providing critical functional insights into the phylogenetic divergence of picocyanobacterial ProX proteins that may be necessary for their ecological success.

Indexed as

BetaineSynechococcusEcotypeGlycinePhylogenyBetaineGlycine

Identifiers

PMID36054310
PMCPMC10087775
OpenAlexW4292295198

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.