Evidence map›Paper›PMID 36053855›Full record

ArticlePhysiologia plantarum2022

Transcriptomic and methylation analysis of susceptible and tolerant grapevine genotypes following Plasmopara viticola infection.

Vanessa Azevedo, Loretta Daddiego, Maria Francesca Cardone, Giorgio Perrella, Lisete Sousa, Rita B Santos, Rui Malhó, Carlo Bergamini, Antonio Domenico Marsico, Andreia Figueiredo and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Physiologia plantarum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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  3. Review
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Vanessa AzevedoFaculdade de Ciências, Plant Biology Department, Biosystems & Integrative Sciences Institute (BioISI), Universidade de Lisboa, Lisbon, Portugal.
Loretta DaddiegoEnergy Technologies and Renewable Sources Department, National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, Rotondella, Matera, Italy.
Maria Francesca CardoneResearch Centre for Viticulture and Enology, Council for Agricultural Research and Economics (CREA), Turi, Bari, Italy.
Giorgio PerrellaDepartment of Biosciences, University of Milan, Milan, Italy.
Lisete SousaDepartment of Statistics and Operations Research, Faculdade de Ciências; Centre of Statistics and its Applications (CEAUL), Universidade de Lisboa, Lisbon, Portugal.
Rita B SantosFaculdade de Ciências, Plant Biology Department, Biosystems & Integrative Sciences Institute (BioISI), Universidade de Lisboa, Lisbon, Portugal.
Rui MalhóFaculdade de Ciências, Plant Biology Department, Biosystems & Integrative Sciences Institute (BioISI), Universidade de Lisboa, Lisbon, Portugal.
Carlo BergaminiResearch Centre for Viticulture and Enology, Council for Agricultural Research and Economics (CREA), Turi, Bari, Italy.
Antonio Domenico MarsicoResearch Centre for Viticulture and Enology, Council for Agricultural Research and Economics (CREA), Turi, Bari, Italy.
Andreia FigueiredoFaculdade de Ciências, Plant Biology Department, Biosystems & Integrative Sciences Institute (BioISI), Universidade de Lisboa, Lisbon, Portugal.ORCID https://orcid.org/0000-0001-8156-7700
Fiammetta AlagnaEnergy Technologies and Renewable Sources Department, National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, Rotondella, Matera, Italy.ORCID https://orcid.org/0000-0003-1878-2023
University of Lisbon · PTCereal Research Centre · ITNational Agency for New Technologies, Energy and Sustainable Economic Development · ITUniversity of Milan · IT

Funding

Fundação Ciência e Tecnologia FCT/MCTES/PIDDACFundação Ciência e Tecnologia IF/00819/2015Fundação Ciência e Tecnologia PD/BD/142909/2018Fundação Ciência e Tecnologia UIDB/00006/2020Fundação Ciência e Tecnologia UIDP/04046/2020International Organisation of Vine and Wine through the 2018 OIV Research grant program (Project: Identification of pathogen related epigenetic marks in grapevine)Partnership for research and innovation in the Mediterranean area (PRIMA) by Project "REVINE - Regenerative agricultural approaches to improve ecosystem services in Mediterranean vineyards" (Italian MUR DM no. 1966/2021) 20114-2Partnership for research and innovation in the Mediterranean area (PRIMA) by Project "REVINE - Regenerative agricultural approaches to improve ecosystem services in Mediterranean vineyards" (Italian MUR DM no. 1966/2021) PRIMA/0011/2020
6 · The paper itself

Abstract

Downy mildew, caused by the biotrophic oomycete Plasmopara viticola, is one of the most economically significant grapevine diseases worldwide. Current strategies to cope with this threat rely on the massive use of chemical compounds during each cultivation season. The economic costs and negative environmental impact associated with these applications increased the urge to search for sustainable strategies of disease control. Improved knowledge of plant mechanisms to counteract pathogen infection may allow the development of alternative strategies for plant protection. Epigenetic regulation, in particular DNA methylation, is emerging as a key factor in the context of plant-pathogen interactions associated with the expression modulation of defence genes. To improve our understanding of the genetic and epigenetic mechanisms underpinning grapevine response to P. viticola, we studied the modulation of both 5-mC methylation and gene expression at 6 and 24 h post-infection (hpi). Leaves of two table grape genotypes (Vitis vinifera), selected by breeding activities for their contrasting level of susceptibility to the pathogen, were analysed. Following pathogen infection, we found variations in the 5-mC methylation level and the gene expression profile. The results indicate a genotype-specific response to pathogen infection. The tolerant genotype (N23/018) at 6 hpi exhibits a lower methylation level compared to the susceptible one (N20/020), and it shows an early modulation (at 6 hpi) of defence and epigenetic-related genes during P. viticola infection. These data suggest that the timing of response is an important mechanism to efficiently counteract the pathogen attack.

Indexed as

OomycetesVitisDisease ResistanceEpigenesis, GeneticGene Expression Regulation, PlantGenotypeMethylationPlant DiseasesTranscriptome

Identifiers

PMID36053855
PMCPMC9826190
OpenAlexW4294169060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.