ArticleBioinformatics (Oxford, England)2022
grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads.
Article in Bioinformatics (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
14 citing papers in PubMed.
- Phylogenetically Diverse Introgression Drives Subtle Population Structure in Pacific Rockfishes.Molecular ecology · 2026Article
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- Rapid adaptation and extinction in synchronized outdoor evolution experiments ofScience (New York, N.Y.) · 2026Article
- A non-invasive method to genotype cephalopod sex by quantitative PCR.bioRxiv : the preprint server for biology · 2025Article
- Phylogenetically diverse introgression drives subtle population structure in Pacific rockfishes.bioRxiv : the preprint server for biology · 2025Article
- Strong but diffuse genetic divergence underlies differentiation in an incipient species of marine stickleback.bioRxiv : the preprint server for biology · 2025Article
- Baboons at a Crossroads: Hybridisation Events and Genomic Links of Central Mozambique's Baboons With Papio Neighbors.American journal of biological anthropology · 2025Article
- Mitochondrial genomes of the European sardine (Sardina pilchardus) reveal Pliocene diversification, extensive gene flow and pervasive purifying selection.Scientific reports · 2024Article
- Maroon Rice Genomic Diversity Reflects 350 Years of Colonial History.Molecular biology and evolution · 2024Article
- grenedalf: population genetic statistics for the next generation of pool sequencing.Bioinformatics (Oxford, England) · 2024Article
- A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics.Molecular biology and evolution · 2024Article
- loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing.Bioinformatics advances · 2024Article
- ARA: a flexible pipeline for automated exploration of NCBI SRA datasets.GigaScience · 2022Article
- Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
summaryWe developed grenepipe, an all-in-one Snakemake workflow to streamline the data processing from raw high-throughput sequencing data of individuals or populations to genotype variant calls. Our pipeline offers a range of popular software tools within a single configuration file, automatically installs software dependencies, is highly optimized for scalability in cluster environments and runs with a single command. AVAILABILITY AND IMPLEMENTATION: grenepipe is published under the GPLv3 and freely available at github.com/moiexpositoalonsolab/grenepipe.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.