Evidence map›Paper›PMID 36052992›Full record

ArticleeLife2022

Vaccination decreases the risk of influenza A virus reassortment but not genetic variation in pigs.

Chong Li, Marie R Culhane, Declan C Schroeder, Maxim C-J Cheeran, Lucina Galina Pantoja, Micah L Jansen, Montserrat Torremorell

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chong LiCollege of Veterinary Medicine, University of Minnesota, Saint Paul, United States.ORCID 0000-0001-6375-0181
Marie R CulhaneCollege of Veterinary Medicine, University of Minnesota, Saint Paul, United States.
Declan C SchroederCollege of Veterinary Medicine, University of Minnesota, Saint Paul, United States.
Maxim C-J CheeranCollege of Veterinary Medicine, University of Minnesota, Saint Paul, United States.
Lucina Galina PantojaZoetis, Parsippany, United States.
Micah L JansenZoetis, Parsippany, United States.
Montserrat TorremorellCollege of Veterinary Medicine, University of Minnesota, Saint Paul, United States.ORCID 0000-0002-9626-6537
University of Minnesota · USZoetis (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although vaccination is broadly used in North American swine breeding herds, managing swine influenza is challenging primarily due to the continuous evolution of influenza A virus (IAV) and the ability of the virus to transmit among vaccinated pigs. Studies that have simultaneously assessed the impact of vaccination on the emergence of IAV reassortment and genetic variation in pigs are limited. Here, we directly sequenced 28 bronchoalveolar lavage fluid (BALF) samples collected from vaccinated and unvaccinated pigs co-infected with H1N1 and H3N2 IAV strains, and characterized 202 individual viral plaques recovered from 13 BALF samples. We identified 54 reassortant viruses that were grouped in 17 single and 16 mixed genotypes. Notably, we found that prime-boost vaccinated pigs had less reassortant viruses than nonvaccinated pigs, likely due to a reduction in the number of days pigs were co-infected with both challenge viruses. However, direct sequencing from BALF samples revealed limited impact of vaccination on viral variant frequency, evolutionary rates, and nucleotide diversity in any IAV coding regions. Overall, our results highlight the value of IAV vaccination not only at limiting virus replication in pigs but also at protecting public health by restricting the generation of novel reassortants with zoonotic and/or pandemic potential.

Indexed as

Influenza A virusInfluenza A Virus, H1N1 SubtypeOrthomyxoviridae InfectionsSwine DiseasesAnimalsInfluenza A Virus, H3N2 SubtypeReassortant VirusesSwineVaccinationgenetic variationinfectious diseaseinfluenza vaccinationmicrobiologypigreassortmentviruses

Identifiers

PMID36052992
PMCPMC9439680
OpenAlexW4294219418

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.