Evidence map›Paper›PMID 36052737›Full record

ArticleMolecular oncology2022

Analysis of genetic profiling, pathomics signature, and prognostic features of primary lymphoepithelioma-like carcinoma of the renal pelvis.

Bo Fan, Yuanbin Huang, Hongshuo Zhang, Tingyu Chen, Shenghua Tao, Xiaogang Wang, Shuang Wen, Honglong Wang, Zhe Lin, Tianqing Liu and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Bo FanDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Yuanbin HuangDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Hongshuo ZhangDepartment of Biochemistry, Institute of Glycobiology, Dalian Medical University, China.
Tingyu ChenDepartment of Clinical Medicine, Dalian Medical University, China.
Shenghua TaoDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Xiaogang WangDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Shuang WenDepartment of Pathology, Dalian Friendship Hospital, China.
Honglong WangDepartment of Pathology, Dalian Friendship Hospital, China.
Zhe LinEthics Committee, Second Affiliated Hospital of Dalian Medical University, China.
Tianqing LiuDepartment of Pathology, Dalian Friendship Hospital, China.
Hongxian ZhangDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Tao HeDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.
Xiancheng LiDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, China.ORCID 0000-0001-8547-8609
Dalian Medical University · CNChina-Japan Friendship Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic features of primary lymphoepithelioma-like carcinoma (LELC) of the upper urinary tract have not been systematically explored. In this study, tumor mutation profiling was performed using whole-genome sequencing in two patients with LELC of the renal pelvis. Novel candidate variants relevant to known disease genes were selected using rare-variant burden analysis. Subsequently, a population-based study was performed using the Surveillance, Epidemiology, and End Results (SEER), PubMed, MEDLINE, Embase, and Scopus databases to explore clinical features and prognostic risk factors. Immunohistochemical analysis revealed seven positive cytokeratin-associated markers in tumor cells and five positive lymphocyte-associated markers in and around the tumor area. Sub-sequently, we identified KDM6A as the susceptibility gene and LEPR as the driver gene by Sanger sequencing in case 2 of LELC of the renal pelvis. Three mutation sites of the existing targeted drugs were screened: CA9, a therapeutic target for zonisamide; ARVCF, a therapeutic target for bupropion; and PLOD3, a therapeutic target for vitamin C. In a population-based study, patients with primary LELC of the upper urinary tract had clinical outcomes similar to those of patients with primary upper urinary tract urothelial carcinoma (UUT-UC) before and after propensity score matching at 1 : 5. Focal subtype was an independent prognostic factor for the overall survival of patients with LELC of the upper urinary tract. The carcinogenesis of primary LELC may be due to different genetic variations, including single-nucleotide variants, insertion and deletions, structural variations, and repeat regions, which may provide the basis for clinical diagnosis and treatment. The prognosis of LELC in the upper urinary tract is similar to that of UUT-UC. We suggest that the focal subtype can serve as a prognostic factor for LELC of the upper urinary tract; however, further studies are required to confirm this.

Indexed as

Carcinoma, Squamous CellCarcinoma, Transitional CellUrinary Bladder NeoplasmsAscorbic AcidBupropionHistone DemethylasesHumansKeratinsKidney PelvisNucleotidesPrognosisZonisamideAscorbic AcidBupropionHistone DemethylasesKeratinsNucleotidesZonisamidegenetic characteristicsimmunohistochemical profilelymphoepithelioma-like carcinomapopulation-based studypropensity score matchingwhole-genome sequencing

Identifiers

PMID36052737
PMCPMC9580896
OpenAlexW4292749572

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.