Evidence map›Paper›PMID 36052643›Full record

ArticleJournal of cell science2022

The histone methyltransferase SETD2 negatively regulates cell size.

Thom M Molenaar, Muddassir Malik, Joana Silva, Ning Qing Liu, Judith H I Haarhuis, Christina Ambrosi, Eliza Mari Kwesi-Maliepaard, Tibor van Welsem, Tuncay Baubec, William J Faller and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Thom M MolenaarDivision of Gene Regulation, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0002-0061-3566
Muddassir MalikDivision of Gene Regulation, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0002-6273-5956
Joana SilvaDivision of Oncogenomics, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0001-5301-1799
Ning Qing LiuDivision of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0002-3151-638X
Judith H I HaarhuisDivision of Cell Biology, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.
Christina AmbrosiDepartment of Molecular Mechanisms of Disease, University of Zurich, 8057 Zurich, Switzerland.ORCID 0000-0002-7167-1173
Eliza Mari Kwesi-MaliepaardDivision of Gene Regulation, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0001-9658-1935
Tibor van WelsemDivision of Gene Regulation, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.
Tuncay BaubecDepartment of Molecular Mechanisms of Disease, University of Zurich, 8057 Zurich, Switzerland.ORCID 0000-0001-8474-6587
William J FallerDivision of Oncogenomics, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0002-0738-2254
Fred van LeeuwenDivision of Gene Regulation, Netherlands Cancer Institute, 1066CX Amsterdam, The Netherlands.ORCID 0000-0002-7267-7251
The Netherlands Cancer Institute · NLUniversity of Zurich · CHUtrecht University · NL

Funding

Antoni van Leeuwenhoek Nederlands Kanker InstituutEMBO ALTF 210-2018KWF Kankerbestrijding KWF-NKI2018-1/11490Nederlandse Organisatie voor Wetenschappelijk Onderzoek NWO-VICI-016.130.627Swiss National Science Foundation 183722ZonMw TOP91218022
6 · The paper itself

Abstract

Cell size varies between cell types but is tightly regulated by cell intrinsic and extrinsic mechanisms. Cell size control is important for cell function, and changes in cell size are frequently observed in cancer. Here, we uncover a role for SETD2 in regulating cell size. SETD2 is a lysine methyltransferase and a tumor suppressor protein involved in transcription, RNA processing and DNA repair. At the molecular level, SETD2 is best known for associating with RNA polymerase II through its Set2-Rbp1 interacting (SRI) domain and methylating histone H3 on lysine 36 (H3K36) during transcription. Using multiple independent perturbation strategies, we identify SETD2 as a negative regulator of global protein synthesis rates and cell size. We provide evidence that overexpression of the H3K36 demethylase KDM4A or the oncohistone H3.3K36M also increase cell size. In addition, ectopic overexpression of a decoy SRI domain increased cell size, suggesting that the relevant substrate is engaged by SETD2 via its SRI domain. These data add a central role of SETD2 in regulating cellular physiology and warrant further studies on separating the different functions of SETD2 in cancer development.

Indexed as

HistonesNeoplasmsCell SizeHistone MethyltransferasesHumansJumonji Domain-Containing Histone DemethylasesLysineRNA Polymerase IITumor Suppressor ProteinsHistone MethyltransferasesHistonesJumonji Domain-Containing Histone DemethylasesKDM4A protein, humanLysineRNA Polymerase IITumor Suppressor ProteinsCell sizeHistone methyltransferaseSETD2Translation

Identifiers

PMID36052643
PMCPMC9659392
OpenAlexW4294225696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.