Evidence map›Paper›PMID 36051887›Full record

ArticleComputational and structural biotechnology journal2022

Network metrics, structural dynamics and density functional theory calculations identified a novel Ursodeoxycholic Acid derivative against therapeutic target Parkin for Parkinson's disease.

Aniket Naha, Sanjukta Banerjee, Reetika Debroy, Soumya Basu, Gayathri Ashok, P Priyamvada, Hithesh Kumar, A R Preethi, Harpreet Singh, Anand Anbarasu and 1 more

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Aniket NahaMedical and Biological Computing Laboratory, School of Bio-Sciences and Technology (SBST), Vellore Institute of Technology (VIT), Vellore-632014, Tamil Nadu, India.
Sanjukta BanerjeeDepartment of Biotechnology, SBST, VIT, Vellore, India.
Reetika DebroyDepartment of Bio-Medical Sciences, SBST, VIT, Vellore, India.
Soumya BasuDepartment of Biotechnology, SBST, VIT, Vellore, India.
Gayathri AshokDepartment of Bio-Sciences, SBST, VIT, Vellore, India.
P PriyamvadaDepartment of Bio-Sciences, SBST, VIT, Vellore, India.
Hithesh KumarDepartment of Bio-Sciences, SBST, VIT, Vellore, India.
A R PreethiDepartment of Biotechnology, SBST, VIT, Vellore, India.
Harpreet SinghDivision of Biomedical Informatics, Indian Council of Medical Research (ICMR), New Delhi 110029, India.
Anand AnbarasuMedical and Biological Computing Laboratory, School of Bio-Sciences and Technology (SBST), Vellore Institute of Technology (VIT), Vellore-632014, Tamil Nadu, India.
Sudha RamaiahMedical and Biological Computing Laboratory, School of Bio-Sciences and Technology (SBST), Vellore Institute of Technology (VIT), Vellore-632014, Tamil Nadu, India.
Vellore Institute of Technology University · INBio-Medical Science (South Korea) · KRIndian Council of Medical Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parkinson's disease (PD) has been designated as one of the priority neurodegenerative disorders worldwide. Although diagnostic biomarkers have been identified, early onset detection and targeted therapy are still limited. An integrated systems and structural biology approach were adopted to identify therapeutic targets for PD. From a set of 49 PD associated genes, a densely connected interactome was constructed. Based on centrality indices, degree of interaction and functional enrichments,

Indexed as

ADMET, Absorption, Distribution, Metabolism, Excretion, ToxicityAI, Artificial IntelligenceBBB, Blood Brain BarrierBiomarkerCS, Confidence ScoresDFT, Density Functional TheoryDL, Deep LearningDockingFEA, Functional Enrichment AnalysisGI, Gasto-IntestinalGIN, Gene Interaction NetworkGO, Gene OntologyHOMO, Highest Occupied Molecular OrbitalIC, Inhibition ConstantLB, Lewy BodiesLD, Lethal DoseLigand optimizationLUMO, Lowest Unoccupied Molecular OrbitalMDS, Molecular Dynamics SimulationML, Machine LearningMMP, Mitochondrial Membrane PotentialNeurodegenerative disorderPD, Parkinson's DiseaseRg, Radius of GyrationRMSD, Root Means Square DeviationRMSF, Root Means Square FluctuationSimulationSNpc, Substantia Nigra pars compactaSystems biologyTPSA, Total Polar Surface AreaUDCA, Ursodeoxycholic Acid

Identifiers

PMID36051887
PMCPMC9399899
OpenAlexW4291289969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.