Evidence map›Paper›PMID 36050336›Full record

ArticleScientific reports2022

Transcriptome profiling reveals the genes and pathways involved in thermo-tolerance in wheat (Triticum aestivum L.) genotype Raj 3765.

Mawuli K Azameti, Alok Ranjan, P K Singh, Kishor Gaikwad, Anil Kumar Singh, Monika Dalal, Ajay Arora, Vandna Rai, Jasdeep C Padaria

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mawuli K AzametiPG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Alok RanjanICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
P K SinghDivision of Genetics, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India.
Kishor GaikwadICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Anil Kumar SinghICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Monika DalalICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Ajay AroraDivision of Plant Physiology, Indian Agricultural Research Institute, Pusa, New Delhi, 110012, India.
Vandna RaiICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Jasdeep C PadariaPG School, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. jasdeep_kaur64@yahoo.co.in.
National Research Centre on Plant Biotechnology · INIndian Agricultural Research Institute · INInstitute for Scientific and Technological Information · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat, one of the most widely consumed staple food crops globally, is relatively vulnerable to high temperature-induced heat stress. It is therefore essential to gain more insight into the comprehensive mechanism of thermotolerance of wheat in order to safeguard its production. In view of this, we analysed heat stress responsive transcriptome data of wheat to determine its gene expression level under heat stress. A total of 7990 DEGs, including 4483 up-regulated and 3507 down regulated genes were identified. Gene Ontology (GO) analysis categorized 3910 DEGs into different ontology families. 146 pathways involving 814 DEGs were enriched during KEGG analysis. Metabolic pathways and biosynthesis of secondary metabolites were the major pathways enriched. MYB (myeloblastosis) transcription factors (TFs) and many other TFs as bHLH, WRKY, NAC, ERF, were determined to be quite abundant in the DEGs. Since various reports indicate that these TFs play important role in plants abiotic stress, it is an indication that our DEGs are functional in heat stress tolerance. Verification of few selected DEGs using RT-qPCR produced expression levels similar to the transcriptome data. This indicates that the transcriptome data is reliable. These results could be helpful in enhancing our understanding of the mechanism underlying thermotolerance in wheat.

Indexed as

ThermotoleranceTriticumGene Expression ProfilingGene Expression Regulation, PlantGenotypeHumansPlant ProteinsTranscriptomePlant Proteins

Identifiers

PMID36050336
PMCPMC9437100
OpenAlexW4294086478

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.