Evidence map›Paper›PMID 36048856›Full record

ArticlePloS one2022

A rapid RT-LAMP SARS-CoV-2 screening assay for collapsing asymptomatic COVID-19 transmission.

Rebecca C Allsopp, Caroline M Cowley, Ruth C Barber, Carolyn Jones, Christopher W Holmes, Paul W Bird, Shailesh G Gohil, Claire Blackmore, Martin D Tobin, Nigel Brunskill and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Rebecca C AllsoppLeicester Cancer Research Centre, Department of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.ORCID 0000-0003-4887-8632
Caroline M CowleyLeicester Molecular Diagnostics, Leicester Cancer Research Centre, University of Leicester, Leicester, United Kingdom.
Ruth C BarberLeicester Precision Medicine Institute, University of Leicester, Leicester, United Kingdom.
Carolyn JonesLeicester Precision Medicine Institute, University of Leicester, Leicester, United Kingdom.
Christopher W HolmesClinical Microbiology, University Hospitals of Leicester NHS Trust, Leicester Royal Infirmary, Leicester, United Kingdom.ORCID 0000-0002-4765-9107
Paul W BirdClinical Microbiology, University Hospitals of Leicester NHS Trust, Leicester Royal Infirmary, Leicester, United Kingdom.ORCID 0000-0002-5890-5262
Shailesh G GohilLeicester Cancer Research Centre, Department of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Claire BlackmoreCentre for Environmental Health and Sustainability, University of Leicester, Leicester, United Kingdom.ORCID 0000-0002-0610-3903
Martin D TobinDepartment of Health Sciences, University of Leicester, Leicester, United Kingdom.
Nigel BrunskillLeicester NIHR Biomedical Research Centre, Leicester, United Kingdom.
Philip N BakerLeicester NIHR Biomedical Research Centre, Leicester, United Kingdom.
Jacqui A ShawLeicester Cancer Research Centre, Department of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
University of Leicester · GB

Funding

Department of Health NIHR201371Medical Research Council MC-MC_PC_18054Medical Research Council MC_PC_18054Medical Research Council MC_PC_19004Medical Research Council MC_PC_19043Wellcome Trust 202849/Z/16/ZWellcome Trust WT202849/Z/16/Z
6 · The paper itself

Abstract

purposeTo demonstrate the diagnostic performance of rapid SARS-CoV-2 RT-LAMP assays, comparing the performance of genomic versus sub-genomic sequence target with subsequent application in an asymptomatic screening population.

methodsRT-LAMP diagnostic specificity (DSe) and sensitivity (DSe) was determined using 114 RT-PCR clinically positive and 88 RT-PCR clinically negative swab samples processed through the diagnostic RT-PCR service within the University Hospitals of Leicester NHS Trust. A swab-based RT-LAMP SARS-CoV-2 screening programme was subsequently made available to all staff and students at the University of Leicester (Autumn 2020), implemented to ISO 15189:2012 standards using NHS IT infrastructure and supported by University Hospital Leicester via confirmatory NHS diagnostic laboratory testing of RT-LAMP 'positive' samples.

resultsValidation samples reporting a Ct < 20 were detected at 100% DSe and DSp, reducing to 95% DSe (100% DSp) for all samples reporting a Ct < 30 (both genomic dual sub-genomic assays). Advisory screening identified nine positive cases in 1680 symptom free individuals (equivalent to 540 cases per 100,000) with results reported back to participants and feed into national statistics within 48 hours.

conclusionThis work demonstrates the utility of a rapid RT-LAMP assay for collapsing transmission of SARS-CoV-2 in an asymptomatic screening population.

Indexed as

COVID-19SARS-CoV-2HumansMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRNA, ViralSensitivity and SpecificityRNA, Viral

Identifiers

PMID36048856
PMCPMC9436079
OpenAlexW4294044654

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.