Evidence map›Paper›PMID 36048345›Full record

ArticleBrain informatics2022

ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals.

Marcos Fabietti, Mufti Mahmud, Ahmad Lotfi, M Shamim Kaiser

Open access · goldAbstract read
In one paragraph

Article in Brain informatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 62% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Marcos FabiettiDepartment of Computer Science, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK.
Mufti MahmudDepartment of Computer Science, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. muftimahmud@gmail.com.
Ahmad LotfiDepartment of Computer Science, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK.
M Shamim KaiserInstitute of Information Technology, Jahangirnagar University, Dhaka, 1342, Savar, Bangladesh.
Nottingham Trent University · GBJahangirnagar University · BD

Funding

Nottingham Trent University VC Studentship 2019
6 · The paper itself

Abstract

Brain signals are recorded using different techniques to aid an accurate understanding of brain function and to treat its disorders. Untargeted internal and external sources contaminate the acquired signals during the recording process. Often termed as artefacts, these contaminations cause serious hindrances in decoding the recorded signals; hence, they must be removed to facilitate unbiased decision-making for a given investigation. Due to the complex and elusive manifestation of artefacts in neuronal signals, computational techniques serve as powerful tools for their detection and removal. Machine learning (ML) based methods have been successfully applied in this task. Due to ML's popularity, many articles are published every year, making it challenging to find, compare and select the most appropriate method for a given experiment. To this end, this paper presents ABOT (Artefact removal Benchmarking Online Tool) as an online benchmarking tool which allows users to compare existing ML-driven artefact detection and removal methods from the literature. The characteristics and related information about the existing methods have been compiled as a knowledgebase (KB) and presented through a user-friendly interface with interactive plots and tables for users to search it using several criteria. Key characteristics extracted from over 120 articles from the literature have been used in the KB to help compare the specific ML models. To comply with the FAIR (Findable, Accessible, Interoperable and Reusable) principle, the source code and documentation of the toolbox have been made available via an open-access repository.

Indexed as

Computational neuroscienceElectrocorticogramElectroencephalogramLocal field potentialsMagnetoencephalogramNeuronal spikes

Identifiers

PMID36048345
PMCPMC9437165
OpenAlexW4294128899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.