Evidence map›Paper›PMID 36048153›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Time-resolved serial femtosecond crystallography on fatty-acid photodecarboxylase: lessons learned.

Kyprianos Hadjidemetriou, Nicolas Coquelle, Thomas R M Barends, Elke De Zitter, Ilme Schlichting, Jacques Philippe Colletier, Martin Weik

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kyprianos HadjidemetriouUniversité Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.ORCID 0000-0003-1918-763X
Nicolas CoquelleUniversité Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.
Thomas R M BarendsMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120 Heidelberg, Germany.ORCID 0000-0002-9488-3005
Elke De ZitterUniversité Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.ORCID 0000-0001-6325-7354
Ilme SchlichtingMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120 Heidelberg, Germany.ORCID 0000-0002-0936-7496
Jacques Philippe ColletierUniversité Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.
Martin WeikUniversité Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.ORCID 0000-0001-9297-642X

Funding

European Research Council, H2020 European Research Council 724362
6 · The paper itself

Abstract

Upon absorption of a blue-light photon, fatty-acid photodecarboxylase catalyzes the decarboxylation of free fatty acids to form hydrocarbons (for example alkanes or alkenes). The major components of the catalytic mechanism have recently been elucidated by combining static and time-resolved serial femtosecond crystallography (TR-SFX), time-resolved vibrational and electronic spectroscopies, quantum-chemical calculations and site-directed mutagenesis [Sorigué et al. (2021), Science, 372, eabd5687]. The TR-SFX experiments, which were carried out at four different picosecond to microsecond pump-probe delays, yielded input for the calculation of Fourier difference maps that demonstrated light-induced decarboxylation. Here, some of the difficulties encountered during the experiment as well as during data processing are highlighted, in particular regarding space-group assignment, a pump-laser power titration is described and data analysis is extended by structure-factor extrapolation of the TR-SFX data. Structure refinement against extrapolated structure factors reveals a reorientation of the generated hydrocarbon and the formation of a photoproduct close to Cys432 and Arg451. Identification of its chemical nature, CO

Indexed as

Fatty AcidsLasersCrystallographyCrystallography, X-RayLightSpectrum AnalysisFatty Acidsfatty-acid photodecarboxylasephotoenzymesserial femtosecond crystallographystructure-factor extrapolationtime-resolved crystallography

Identifiers

PMID36048153
PMCPMC9435596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.