Evidence map›Paper›PMID 36046364›Full record

ArticleJournal of oncology2022

Combining Organoid Models with Next-Generation Sequencing to Reveal Tumor Heterogeneity and Predict Therapeutic Response in Breast Cancer.

Yuhong Liu, Yixiang Gan, NiJiati AiErken, Wei Chen, Shiwei Zhang, Jie Ouyang, Leli Zeng, Di Tang

Open access · hybridAbstract read
In one paragraph

Article in Journal of oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Emerging roles of 3D-culture systems in tackling tumor drug resistance.Cancer drug resistance (Alhambra, Calif.) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yuhong LiuThe Seventh Affiliated Hospital of Sun Yat-Sen University, General Surgery, Shenzhen 518107, China.ORCID https://orcid.org/0000-0002-1469-271X
Yixiang GanSchool of Medicine, Sun Yat-Sen University, Shenzhen 518107, China.
NiJiati AiErkenThe Seventh Affiliated Hospital of Sun Yat-Sen University, General Surgery, Shenzhen 518107, China.
Wei ChenThe Seventh Affiliated Hospital, Guangdong Provincial Key Laboratory of Digestive Cancer Research, Shenzhen 518107, China.
Shiwei ZhangThe Seventh Affiliated Hospital, Guangdong Provincial Key Laboratory of Digestive Cancer Research, Shenzhen 518107, China.
Jie OuyangDepartment of Breast Surgery, Dongguan Tungwah Hospital, Dongguan 518107, China.ORCID https://orcid.org/0000-0002-3934-2046
Leli ZengThe Seventh Affiliated Hospital, Guangdong Provincial Key Laboratory of Digestive Cancer Research, Shenzhen 518107, China.ORCID https://orcid.org/0000-0002-3378-5241
Di TangThe Seventh Affiliated Hospital of Sun Yat-Sen University, General Surgery, Shenzhen 518107, China.ORCID https://orcid.org/0000-0002-6486-273X
Sun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estrogen receptor-positive (ER+) breast cancer (BC) is a common subtype of BC with a relatively good prognosis. However, recurrence and death from ER+ BC occur because of tumor heterogeneity. This study aimed to explore tumor heterogeneity using next-generation sequencing (NGS) and tumor-organoid models to promote BC precise therapy. We collected needle biopsy, surgical excision, and cerebrospinal fluid (CSF) samples to establish tumor organoids. We found that the histological characteristics of organoids were consistent with original lesions and recapitulated their heterogenicity. In addition, the NGS results showed that PIK3CA and TP53 genes had detrimental mutations. BAP1, RET, AXIN2, and PPP2R2A genes had mutations with unknown function. The score for homologous recombination deficiency (HRD) of genome was 56, indicating that the tumor was likely sensitive to PARPi. The mutant-allele tumor heterogeneity (MATH) value of the tumor genome was 68.03, indicating high tumor heterogeneity. At last, we performed a drug screening on organoids. The toxicity of different drugs toward BC organoids originated from needle biopsy and surgical excision was tested, respectively. The IC

Identifiers

PMID36046364
PMCPMC9423951
OpenAlexW4292972817

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.