Evidence map›Paper›PMID 36046072›Full record

ArticleExploration of targeted anti-tumor therapy2020

Implementation of an NGS panel for clinical practice in paraffin-embedded tissue samples from locally advanced and metastatic melanoma patients.

Paola Castillo, Marta Marginet, Pedro Jares, Mireia García, Elena Gonzalvo, Ana Arance, Adriana García, Llucia Alos, Cristina Teixido

Open access · diamondAbstract read
In one paragraph

Article in Exploration of targeted anti-tumor therapy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Anorectal mucosal melanoma.Seminars in colon & rectal surgery · 2023
    Article
  6. Exploratory analysis of clinical benefit of ipilimumab and nivolumab treatment in patients with metastatic melanoma from a single institution.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Article
  7. Review
  8. Article
  9. Annals of translational medicine · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Paola CastilloDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.ORCID 0000-0002-9284-8601
Marta MarginetDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.
Pedro JaresDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.ORCID 0000-0002-8401-579X
Mireia GarcíaDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.
Elena GonzalvoDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.
Ana AranceDepartment of Medical Oncology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.ORCID 0000-0003-2896-1957
Adriana GarcíaDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.
Llucia AlosDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.ORCID 0000-0002-3460-0384
Cristina TeixidoDepartment of Pathology, Hospital Clinic, IDIBAPS, University of Barcelona, 08036 Barcelona, Spain.ORCID 0000-0002-7226-6567
Consorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESUniversitat de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aim: Single biomarker diagnostic test of Methods: Patients diagnosed with advanced melanoma at our center from 2017 to 2019 were included. Presence of genetic alterations was performed using two methods: real-time polymerase chain reaction-based Idylla test (Biocartis) and NGS with the oncomine solid tumor DNA kit (Thermo Fisher Scientific). Total genomic DNA was extracted from formalin-fixed and paraffin embedded samples for sequencing. Results: A total of 155 samples were evaluated for molecular analysis but 40 samples (25.8%) were inadequate for sequencing. The clinical utility of Conclusions: Targeted-NGS testing is a feasible technique to implement in the routine clinical practice. Based on our results, NGS has provided more information on target-genes than RT-PCR technique, maximizing the benefit for patients with advanced melanoma.

Indexed as

BRAFIdyllaMelanomanext-generation sequencingreal-time polymerase chain reaction

Identifiers

PMID36046072
PMCPMC9400780
OpenAlexW3014799633

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.