Evidence map›Paper›PMID 36044998›Full record

ArticleFEMS microbiology letters2022

Enterococcus faecalis V583 cell membrane protein expression to alkaline stress.

Peter Cathro, Peter McCarthy, Peter Hoffmann, Stephen Kidd, Peter Zilm

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology letters, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Peter CathroOral Microbiology Laboratory, Adelaide Dental School, The University of Adelaide, Adelaide, South Australia, Australia.ORCID 0000-0002-8675-4377
Peter McCarthySchool of Biological Sciences, The University of Adelaide, South Australia, Australia.
Peter HoffmannAdelaide Proteomics Centre, The University of Adelaide, Adelaide, South Australia 5005, Australia.
Stephen KiddSchool of Biological Sciences, The University of Adelaide, South Australia, Australia.ORCID 0000-0002-2118-1651
Peter ZilmOral Microbiology Laboratory, Adelaide Dental School, The University of Adelaide, Adelaide, South Australia, Australia.
The University of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterococcus faecalis is able to adapt to alkaline conditions and is commonly recovered from teeth in which endodontic treatment has failed. The role that E. faecalis membrane proteins play in survival strategies to extreme alkaline conditions is unclear. We grew E. faecalis V583 in a chemostat at pH 8 and 11 at one-tenth the organism's relative maximum growth rate. Following membrane shaving, isotope-coding protein labels were added at the peptide level to samples and then combined. The relative proportion of membrane proteins were identified using LC-ESI mass spectrometry and MaxQuant analysis. Ratios of membrane proteins were log2 transformed, with proteins deviating by more than 1 SD of the mean considered to be up- or down-regulated. A total of six proteins were up-regulated in pH 11 including: EF0669 (polysaccharide biosynthesis family); EF1927 (glycerol uptake facilitator), and EF0114 (glycosyl hydrolase). A total of five proteins were down-regulated including: EF0108 (C4-dicarboxylate transporter); EF1838 (PTS system IIC component); EF0456 (PTS system IID component); and EF0022 (PTS mannose-specific IID component). In extreme alkaline conditions, the membrane proteins of E. faecalis seem to be involved in a shift of carbohydrate metabolism from the PTS system to glycerol, which supports the formation of a protective capsule protecting the cell.

Indexed as

Enterococcus faecalisMembrane ProteinsBacterial ProteinsDicarboxylic Acid TransportersEnterococcusGlycerolHydrolasesMannosePolysaccharidesBacterial ProteinsDicarboxylic Acid TransportersGlycerolHydrolasesMannoseMembrane ProteinsPolysaccharidesalkaline pHbiofilmcontinuous cultureEnterococcus faecalisICPLmembrane shaving

Identifiers

PMID36044998
PMCPMC9491840
OpenAlexW4294128137

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.