Evidence map›Paper›PMID 36044839›Full record

ArticleCell reports2022

Arid1a mutation suppresses TGF-β signaling and induces cholangiocarcinoma.

Bing Guo, Scott C Friedland, William Alexander, Jacquelyn A Myers, Wenjia Wang, Michael R O'Dell, Michael Getman, Christa L Whitney-Miller, Diana Agostini-Vulaj, Aaron R Huber and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Bing GuoDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA; Division of Hematology and Oncology, Department of Medicine, Wilmot Cancer Institute, University of Rochester Medical Center, 300 Elmwood Avenue, Rochester, NY 14642, USA.
Scott C FriedlandDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA.
William AlexanderDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Jacquelyn A MyersGenomics Research Center, University of Rochester Medical Center, Rochester, NY 14642, USA.
Wenjia WangDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA; Division of Hematology and Oncology, Department of Medicine, Wilmot Cancer Institute, University of Rochester Medical Center, 300 Elmwood Avenue, Rochester, NY 14642, USA.
Michael R O'DellDivision of Hematology and Oncology, Department of Medicine, Wilmot Cancer Institute, University of Rochester Medical Center, 300 Elmwood Avenue, Rochester, NY 14642, USA.
Michael GetmanDepartment of Pediatrics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Christa L Whitney-MillerDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY 14642, USA.
Diana Agostini-VulajDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY 14642, USA.
Aaron R HuberDepartment of Pathology and Laboratory Medicine, University of Rochester Medical Center, Rochester, NY 14642, USA.
Stephano S MelloDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Paula M VertinoDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Hartmut K LandDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA; Division of Hematology and Oncology, Department of Medicine, Wilmot Cancer Institute, University of Rochester Medical Center, 300 Elmwood Avenue, Rochester, NY 14642, USA.
Laurie A SteinerDepartment of Pediatrics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Aram F HezelDepartment of Biomedical Genetics, University of Rochester Medical Center, Rochester, NY 14642, USA; Division of Hematology and Oncology, Department of Medicine, Wilmot Cancer Institute, University of Rochester Medical Center, 300 Elmwood Avenue, Rochester, NY 14642, USA. Electronic address: aram_hezel@urmc.rochester.edu.
University of Rochester Medical Center · US

Funding

Mediators of cancer cell homeostasis: intervention targets common to diverse types of cancerR35CA197562 · NCI · UNIVERSITY OF ROCHESTER · PI LAND, HARTMUT · 2015 to 2021
$5.9M
Relaxed Polymerase Pausing as a Driver of Epigenetic Plasticity and Cancer Cell InvasionR01CA250531 · NCI · UNIVERSITY OF ROCHESTER · PI VERTINO, PAULA M. · 2021 to 2025
$2.2M
Genetics pathways in intra-hepatic cholangiocarcinomaR01CA172302 · NCI · UNIVERSITY OF ROCHESTER · PI HEZEL, ARAM F. · 2013 to 2017
$1.6M
NCI NIH HHS R01 CA172302NCI NIH HHS R01 CA250531NCI NIH HHS R35 CA197562
6 · The paper itself

Abstract

Activating KRAS mutations and functional loss of members of the SWI/SNF complex, including ARID1A, are found together in the primary liver tumor cholangiocarcinoma (CC). How these mutations cooperate to promote CC has not been established. Using murine models of hepatocyte and biliary-specific lineage tracing, we show that Kras and Arid1a mutations drive the formation of CC and tumor precursors from the biliary compartment, which are accelerated by liver inflammation. Using cultured cells, we find that Arid1a loss causes cellular proliferation, escape from cell-cycle control, senescence, and widespread changes in chromatin structure. Notably, we show that the biliary proliferative response elicited by Kras/Arid1a cooperation and tissue injury in CC is caused by failed engagement of the TGF-β-Smad4 tumor suppressor pathway. We thus identify an ARID1A-TGF-β-Smad4 axis as essential in limiting the biliary epithelial response to oncogenic insults, while its loss leads to biliary pre-neoplasia and CC.

Indexed as

Bile Duct NeoplasmsCholangiocarcinomaAnimalsBile Ducts, IntrahepaticDNA-Binding ProteinsHumansMiceMutationNuclear ProteinsProto-Oncogene Proteins p21(ras)Transcription FactorsTransforming Growth Factor betaARID1A protein, humanArid1a protein, mouseDNA-Binding ProteinsNuclear ProteinsProto-Oncogene Proteins p21(ras)Transcription FactorsTransforming Growth Factor betaARID1AATAC-seqbile ductscell cyclecholangiocarcinomaCP: CancerKRASmouse embryonic fibroblastsRNA-seqTGF-βtransdifferentiation

Identifiers

PMID36044839
PMCPMC9808599
OpenAlexW4293692945

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.