Evidence map›Paper›PMID 36044602›Full record

ArticleBioconjugate chemistry2023

Using Spectroscopy to Guide the Adaptation of Aptamers into Electrochemical Aptamer-Based Sensors.

Yuyang Wu, Simona Ranallo, Erica Del Grosso, Alejandro Chamoro-Garcia, Herbert L Ennis, Nenad Milosavić, Kyungae Yang, Tod Kippin, Francesco Ricci, Milan Stojanovic and 1 more

Abstract read
In one paragraph

Article in Bioconjugate chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Matrix-Activated Aptamer Sensors for Human Serum Analysis.Angewandte Chemie (International ed. in English) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Continuous, Week-Long, Seconds-ResolvedJournal of the American Chemical Society · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Modular DNA origami-based electrochemical detection of DNA and proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Codeposition Enhances the Performance of Electrochemical Aptamer-Based Sensors.Langmuir : the ACS journal of surfaces and colloids · 2024
    Article
  15. Real-Time,ACS sensors · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yuyang WuDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.
Simona RanalloDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.
Erica Del GrossoDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.
Alejandro Chamoro-GarciaDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.ORCID 0000-0003-0953-5848
Herbert L EnnisDepartment of Medicine, Columbia University, New York, New York 10032, United States.
Nenad MilosavićDepartment of Medicine, Columbia University, New York, New York 10032, United States.
Kyungae YangDepartment of Medicine, Columbia University, New York, New York 10032, United States.ORCID 0000-0001-5575-4107
Tod KippinDepartment of Psychological and Brain Sciences, University of California Santa Barbara, Santa Barbara, California 93106, United States.
Francesco RicciChemistry Department, University of Rome Tor Vergata, Via della Ricerca Scientifica, 00133 Rome, Italy.ORCID 0000-0003-4941-8646
Milan StojanovicDepartment of Medicine, Columbia University, New York, New York 10032, United States.
Kevin W PlaxcoDepartment of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California 93106, United States.ORCID 0000-0003-4772-8771

Funding

Bio-electrochemical detectors for in vivo continuous monitoringR01EB022015 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI KIPPIN, TOD EDWARD, PLAXCO, KEVIN W · 2017 to 2025
$4.6M
NIBIB NIH HHS R01 EB022015
6 · The paper itself

Abstract

Electrochemical aptamer-based (EAB) sensors utilize the binding-induced conformational change of an electrode-attached, redox-reporter-modified aptamer to transduce target recognition into an easily measurable electrochemical output. Because this signal transduction mechanism is single-step and rapidly reversible, EAB sensors support high-frequency, real-time molecular measurements, and because it recapitulates the reagentless, conformation-linked signaling seen in vivo among naturally occurring receptors, EAB sensors are selective enough to work in the complex, time-varying environments found in the living body. The fabrication of EAB sensors, however, requires that their target-recognizing aptamer be modified such that (1) it undergoes the necessary binding-induced conformational change and (2) that the thermodynamics of this "conformational switch" are tuned to ensure that they reflect an acceptable trade-off between affinity and signal gain. That is, even if an "as-selected" aptamer achieves useful affinity and specificity, it may fail when adapted to the EAB platform because it lacks the binding-induced conformational change required to support EAB signaling. In this paper we reveal the spectroscopy-guided approaches we use to modify aptamers such that they support the necessary binding-induced conformational change. Specifically, using newly reported aptamers, we demonstrate the systematic design of EAB sensors achieving clinically and physiologically relevant specificity, limits of detection, and dynamic range against the targets methotrexate and tryptophan.

Indexed as

Aptamers, NucleotideBiosensing TechniquesElectrochemical TechniquesElectrodesOxidation-ReductionSpectrum AnalysisAptamers, Nucleotide

Identifiers

PMID36044602
PMCPMC10799766

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.