Evidence map›Paper›PMID 36044583›Full record

ArticleScience advances2022

Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds.

Yanzhu Ji, Shaohong Feng, Lei Wu, Qi Fang, Anna Brüniche-Olsen, J Andrew DeWoody, Yalin Cheng, Dezhi Zhang, Yan Hao, Gang Song and 5 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 6 countries.

Yanzhu JiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-0335-8652
Shaohong FengBGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China.ORCID 0000-0002-2462-7348
Lei WuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0001-8837-7627
Qi FangBGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China.ORCID 0000-0002-9181-8689
Anna Brüniche-OlsenSection for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen DK-2200, Denmark.
J Andrew DeWoodyDepartments of Forestry and Natural Resources and Biological Sciences, Purdue University, West Lafayette, IN 47906, USA.ORCID 0000-0002-7315-5631
Yalin ChengKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0003-1161-5716
Dezhi ZhangKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0003-1523-3168
Yan HaoKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-1415-7610
Gang SongKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-0190-8315
Yanhua QuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-4590-7787
Alexander SuhSchool of Biological Sciences, Organism and Environment, University of East Anglia, NR4 7TU, Norwich, UK.
Guojie ZhangFuture Health Laboratory, Innovation Center of Yangtze River Delta, Zhejiang University, Jiaxing 314100, China.ORCID 0000-0001-6860-1521
Shannon J HackettNegaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USA.ORCID 0000-0002-1404-0332
Fumin LeiKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0001-9920-8167
Chinese Academy of Sciences · CNUniversity of Copenhagen · DKField Museum of Natural History · USPurdue University West Lafayette · USUniversity of East Anglia · GBZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rate of mutation accumulation in germline cells can be affected by cell replication and/or DNA damage, which are further related to life history traits such as generation time and body mass. Leveraging the existing datasets of 233 neoavian bird species, here, we investigated whether generation time and body mass contribute to the interspecific variation of orthologous microsatellite length, transposable element (TE) length, and deletion length and how these genomic attributes affect genome sizes. In nonpasserines, we found that generation time is correlated to both orthologous microsatellite length and TE length, and body mass is negatively correlated to DNA deletions. These patterns are less pronounced in passerines. In all species, we found that DNA deletions relate to genome size similarly as TE length, suggesting a role of body mass dynamics in genome evolution. Our results indicate that generation time and body mass shape the evolution of genomic attributes in neoavian birds.

Identifiers

PMID36044583
PMCPMC9432842
OpenAlexW4293783082

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.