Evidence map›Paper›PMID 36044569›Full record

ArticleScience advances2022

Spatiotemporal NF-κB dynamics encodes the position, amplitude, and duration of local immune inputs.

Minjun Son, Tino Frank, Thomas Holst-Hansen, Andrew G Wang, Michael Junkin, Sara S Kashaf, Ala Trusina, Savaş Tay

Abstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Enzymatic DNA Reaction Networks for Orchestrating Stimuli-Dependent Temporal Molecular Pulse.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Macrophage-Fibroblast Crosstalk Shapes Wound Repair Signaling In Vitro.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  5. Spatially structured inflammatory response in the presence of a uniform stimulus.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Autonomous Oscillations of NF-κB.Advances in experimental medicine and biology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Single-nucleus proteomics identifies regulators of protein transport.bioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Minjun SonPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-1227-0596
Tino FrankDepartment of Biosystems Science and Engineering, ETH Zürich, Basel 4058, Switzerland.
Thomas Holst-HansenNiels Bohr Institute, University of Copenhagen, Copenhagen 2100, Denmark.ORCID 0000-0002-5314-7802
Andrew G WangPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-4147-407X
Michael JunkinPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-6368-4700
Sara S KashafPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0003-1079-6009
Ala TrusinaNiels Bohr Institute, University of Copenhagen, Copenhagen 2100, Denmark.ORCID 0000-0003-1945-454X
Savaş TayPritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0002-1912-6020

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
Understanding Mechanisms of Robust Information Processing by NF-kappaBR01GM128042 · NIGMS · UNIVERSITY OF CHICAGO · PI TAY, SAVAS · 2018 to 2022
$1.8M
Ultra-Sensitive Multiplexed Quantification of Proteins Secreted from Single-Cells - Resubmission 01R01GM127527 · NIGMS · UNIVERSITY OF CHICAGO · PI TAY, SAVAS · 2019 to 2022
$1.6M
NIGMS NIH HHS R01 GM127527NIGMS NIH HHS R01 GM128042NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Infected cells communicate through secreted signaling molecules like cytokines, which carry information about pathogens. How differences in cytokine secretion affect inflammatory signaling over space and how responding cells decode information from propagating cytokines are not understood. By computationally and experimentally studying NF-κB dynamics in cocultures of signal-sending cells (macrophages) and signal-receiving cells (fibroblasts), we find that cytokine signals are transmitted by wave-like propagation of NF-κB activity and create well-defined activation zones in responding cells. NF-κB dynamics in responding cells can simultaneously encode information about cytokine dose, duration, and distance to the cytokine source. Spatially resolved transcriptional analysis reveals that responding cells transmit local cytokine information to distance-specific proinflammatory gene expression patterns, creating "gene expression zones." Despite single-cell variability, the size and duration of the signaling zone are tightly controlled by the macrophage secretion profile. Our results highlight how macrophages tune cytokine secretion to control signal transmission distance and how inflammatory signaling interprets these signals in space and time.

Identifiers

PMID36044569
PMCPMC9432835

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.