Evidence map›Paper›PMID 36044253›Full record

ArticleJMIR medical informatics2022

Multicenter Validation of Natural Language Processing Algorithms for the Detection of Common Data Elements in Operative Notes for Total Hip Arthroplasty: Algorithm Development and Validation.

Peijin Han, Sunyang Fu, Julie Kolis, Richard Hughes, Brian R Hallstrom, Martha Carvour, Hilal Maradit-Kremers, Sunghwan Sohn, V G Vinod Vydiswaran

Abstract read
In one paragraph

Article in JMIR medical informatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Peijin HanDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.ORCID https://orcid.org/0000-0003-4753-9057
Sunyang FuDepartment of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN, United States.ORCID https://orcid.org/0000-0003-1691-5179
Julie KolisDepartment of Orthopedic Surgery, University of Michigan, Ann Arbor, MI, United States.ORCID https://orcid.org/0000-0002-8401-1158
Richard HughesDepartment of Orthopedic Surgery, University of Michigan, Ann Arbor, MI, United States.ORCID https://orcid.org/0000-0003-1668-3638
Brian R HallstromDepartment of Orthopedic Surgery, University of Michigan, Ann Arbor, MI, United States.ORCID https://orcid.org/0000-0002-4298-5341
Martha CarvourDepartment of Internal Medicine and Epidemiology, University of Iowa, Iowa City, IA, United States.ORCID https://orcid.org/0000-0003-2295-5062
Hilal Maradit-KremersDepartment of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN, United States.ORCID https://orcid.org/0000-0003-3882-602X
Sunghwan SohnDepartment of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN, United States.ORCID https://orcid.org/0000-0001-8256-2602
V G Vinod VydiswaranDepartment of Learning Health Sciences, Medical School, University of Michigan, Ann Arbor, MI, United States.ORCID https://orcid.org/0000-0002-3122-1936

Funding

Precision Orthopedics: Multimodal Data Infrastructure for Personalized Surgical Decisions in Joint ArthroplastyR01AR073147 · NIAMS · MAYO CLINIC ROCHESTER · PI Hilal Maradit Kremers · 2018 to 2026
$3.5M
NIAMS NIH HHS R01 AR073147
6 · The paper itself

Abstract

backgroundNatural language processing (NLP) methods are powerful tools for extracting and analyzing critical information from free-text data. MedTaggerIE, an open-source NLP pipeline for information extraction based on text patterns, has been widely used in the annotation of clinical notes. A rule-based system, MedTagger-total hip arthroplasty (THA), developed based on MedTaggerIE, was previously shown to correctly identify the surgical approach, fixation, and bearing surface from the THA operative notes at Mayo Clinic.

objectiveThis study aimed to assess the implementability, usability, and portability of MedTagger-THA at two external institutions, Michigan Medicine and the University of Iowa, and provide lessons learned for best practices.

methodsWe conducted iterative test-apply-refinement processes with three involved sites-the development site (Mayo Clinic) and two deployment sites (Michigan Medicine and the University of Iowa). Mayo Clinic was the primary NLP development site, with the THA registry as the gold standard. The activities at the two deployment sites included the extraction of the operative notes, gold standard development (Michigan: registry data; Iowa: manual chart review), the refinement of NLP algorithms on training data, and the evaluation of test data. Error analyses were conducted to understand language variations across sites. To further assess the model specificity for approach and fixation, we applied the refined MedTagger-THA to arthroscopic hip procedures and periacetabular osteotomy cases, as neither of these operative notes should contain any approach or fixation keywords.

resultsMedTagger-THA algorithms were implemented and refined independently for both sites. At Michigan, the study comprised THA-related notes for 2569 patient-date pairs. Before model refinement, MedTagger-THA algorithms demonstrated excellent accuracy for approach (96.6%, 95% CI 94.6%-97.9%) and fixation (95.7%, 95% CI 92.4%-97.6%). These results were comparable with internal accuracy at the development site (99.2% for approach and 90.7% for fixation). Model refinement improved accuracies slightly for both approach (99%, 95% CI 97.6%-99.6%) and fixation (98%, 95% CI 95.3%-99.3%). The specificity of approach identification was 88.9% for arthroscopy cases, and the specificity of fixation identification was 100% for both periacetabular osteotomy and arthroscopy cases. At the Iowa site, the study comprised an overall data set of 100 operative notes (50 training notes and 50 test notes). MedTagger-THA algorithms achieved moderate-high performance on the training data. After model refinement, the model achieved high performance for approach (100%, 95% CI 91.3%-100%), fixation (98%, 95% CI 88.3%-100%), and bearing surface (92%, 95% CI 80.5%-97.3%).

conclusionsHigh performance across centers was achieved for the MedTagger-THA algorithms, demonstrating that they were sufficiently implementable, usable, and portable to different deployment sites. This study provided important lessons learned during the model deployment and validation processes, and it can serve as a reference for transferring rule-based electronic health record models.

Indexed as

information extractionmodel transferabilitynatural language processingtotal hip arthroplasty

Identifiers

PMID36044253
PMCPMC9475406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.