Evidence map›Paper›PMID 36042884›Full record

ArticleSTAR protocols2022

Imaging and analysis for simultaneous tracking of fluorescent biosensors in barcoded cells.

Wei-Yu Chi, Gabriel Au, Jessica Liang, Chao-Cheng Chen, Chuan-Hsiang Huang, Jr-Ming Yang

Abstract read
In one paragraph

Article in STAR protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Reconstructing Signaling Networks Using Biosensor Barcoding.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Wei-Yu ChiDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.
Gabriel AuDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Jessica LiangDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Chao-Cheng ChenDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.
Chuan-Hsiang HuangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA. Electronic address: chuang29@jhmi.edu.
Jr-Ming YangDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA. Electronic address: jyang38@jhmi.edu.

Funding

Treatment of HIV- and HIV+ Patients with HPV16+ CIN2/3 Using pNGLV4a-hCRTE6E7L2 DNA vaccine administered intramuscularly via electroporationP50CA098252 · NCI · JOHNS HOPKINS UNIVERSITY · PI Richard Bruce Roden · 2003 to 2026
$53.5M
Deciphering the network structure of signaling dynamicsR01GM136711 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HUANG, CHUAN-HSIANG · 2020 to 2024
$1.7M
Zeiss LSM780 Confocal Microscope for a Core FacilityS10OD016374 · OD · JOHNS HOPKINS UNIVERSITY · PI KUO, SCOT CHARLES · 2013 to 2013
$584k
Coupling of PI3K signaling and actin-based cytoskeletal networks in cancer cell migration and metastasis?.K22CA212060 · NCI · JOHNS HOPKINS UNIVERSITY · PI HUANG, CHUAN-HSIANG · 2017 to 2019
$455k
NCI NIH HHS K22 CA212060NCI NIH HHS P50 CA098252NIGMS NIH HHS R01 GM136711NIH HHS S10 OD016374
6 · The paper itself

Abstract

We recently developed a biosensor barcoding approach for highly multiplexed tracking of molecular activities in live cells. In this protocol, we detail the labeling of cells expressing different genetically encoded fluorescent biosensors with a pair of barcoding proteins and parallel imaging. Signals from cells with the same barcodes are then pooled together to obtain the dynamics of the corresponding biosensor activity. We describe the steps involved in cell barcoding, image acquisition, and analysis by deep learning models. For complete details on the use and execution of this protocol, please refer to Yang et al. (2021).

Indexed as

Biosensing TechniquesProteinsProteinsCell biologyMicroscopyMolecular/Chemical probesSignal transductionSingle cell

Identifiers

PMID36042884
PMCPMC9420398

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.