Evidence map›Paper›PMID 36042415›Full record

ArticleBMC bioinformatics2022

Adaptiveness of RGB-image derived algorithms in the measurement of fractional vegetation coverage.

Chuangye Song, Jiawen Sang, Lin Zhang, Huiming Liu, Dongxiu Wu, Weiying Yuan, Chong Huang

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Article in BMC bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

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2 citing papers in PubMed.

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5 · Who and what money

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7 authors.

Chuangye SongState Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Jiawen SangState Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Lin ZhangState Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Huiming LiuSatellite Application Centre for Ecology and Environment, Ministry of Ecology and Environment, Beijing, 100094, China.
Dongxiu WuState Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Weiying YuanState Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Chong HuangState Key Laboratory of Resources and Environmental Information System, Institute of Geographic and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China. huangch@lreis.ac.cn.

Funding

Chinese Academy of Sciences KFJ-SW-YW037-01Chinese Academy of Sciences KFJ-SW-YW043-4Chinese Academy of Sciences XDA19020301Chinese Academy of Sciences XDA19050402Chinese Academy of Sciences XDA26010101-4Ministry of Sciences and Technology the People's Republic of China 2019QZKK0301Ministry of Sciences and Technology the People's Republic of China 2021FY10070503
6 · The paper itself

Abstract

backgroundFractional vegetation coverage (FVC) is a crucial parameter in determining vegetation structure. Automatic measurement of FVC using digital images captured by mobile smart devices is a potential direction for future research on field survey methods in plant ecology, and this algorithm is crucial for accurate FVC measurement. However, there is a lack of insight into the influence of illumination on the accuracy of FVC measurements. Therefore, the main objective of this research is to assess the adaptiveness and performance of different algorithms under varying light conditions for FVC measurements and to deepen our understanding of the influence of illumination on FVC measurement. METHODS AND

resultsBased on a literature survey, we selected four algorithms that have been reported to have high accuracy in automatic FVC measurements. The first algorithm (Fun01) identifies green plants based on the combination of [Formula: see text], [Formula: see text], and [Formula: see text] ([Formula: see text], [Formula: see text], and [Formula: see text] are the actual pixel digital numbers from the images based on each RGB channel, [Formula: see text] is the abbreviation of the Excess Green index), the second algorithm (Fun02) is a decision tree that uses color properties to discriminate plants from the background, the third algorithm (Fun03) uses [Formula: see text] ([Formula: see text] is the abbreviation of the Excess Red index) to recognize plants in the image, and the fourth algorithm (Fun04) uses [Formula: see text] and [Formula: see text] to separate the plants from the background. [Formula: see text] is an algorithm used to determine a threshold to transform the image into a binary image for the vegetation and background. We measured the FVC of several surveyed quadrats using these four algorithms under three scenarios, namely overcast sky, solar forenoon, and solar noon. FVC values obtained using the Photoshop-assisted manual identification method were used as a reference to assess the accuracy of the four algorithms selected. Results indicate that under the overcast sky scenario, Fun01 was more accurate than the other algorithms and the MAPE (mean absolute percentage error), BIAS, relBIAS (relative BIAS), RMSE (root mean square error), and relRMSE (relative RMSE) are 8.68%, 1.3, 3.97, 3.13, and 12.33%, respectively. Under the scenario of the solar forenoon, Fun02 (decision tree) was more accurate than other algorithms, and the MAPE, BIAS, relBIAS, RMSE, and relRMSE are 22.70%, - 2.86, - 7.70, 5.00, and 41.23%. Under the solar noon scenario, Fun02 was also more accurate than the other algorithms, and the MAPE, BIAS, relBIAS, RMSE, and relRMSE are 20.60%, - 6.39, - 20.67, 7.30, and 24.49%, respectively.

conclusionsGiven that each algorithm has its own optimal application scenario, among the four algorithms selected, Fun01 (the combination of [Formula: see text], [Formula: see text], and [Formula: see text]) can be recommended for measuring FVC on cloudy days. Fun02 (decision tree) is more suitable for measuring the FVC on sunny days. However, it considerably underestimates the FVC in most cases. We expect the findings of this study to serve as a useful reference for automatic vegetation cover measurements.

Indexed as

AlgorithmsEcologyPlantsCanopy densityDigital imageField surveyGrasslandMobile smart phone

Identifiers

PMID36042415
PMCPMC9429463

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.