Evidence map›Paper›PMID 36040920›Full record

ArticlePloS one2022

Reverse vaccinology approach to identify novel and immunogenic targets against Porphyromonas gingivalis: An in silico study.

Omid Nasiri, Mahsa Hajihassani, Narjes Noori Goodarzi, Sepideh Fereshteh, Negin Bolourchi, Farzaneh Firoozeh, Omid Azizi, Farzad Badmasti

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Omid NasiriDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Tehran, Iran.
Mahsa HajihassaniDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Tehran, Iran.
Narjes Noori GoodarziDepartment of Pathobiology, School of Public Health, Tehran University of Medical Sciences, Tehran, Tehran, Iran.
Sepideh FereshtehDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Tehran, Iran.
Negin BolourchiDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Tehran, Iran.
Farzaneh FiroozehDepartment of Microbiology, School of Medicine, Alborz University of Medical Science, Karaj, Alborz, Iran.
Omid AziziHealth Sciences Research Center, Torbat-e Heydarieh University of Medical Sciences, Torbat-e Heydarieh, Razavi Khorasan, Iran.
Farzad BadmastiDepartment of Bacteriology, Pasteur Institute of Iran, Tehran, Tehran, Iran.ORCID 0000-0003-3502-147X
Pasteur Institute of Iran · IRAlborz University of Medical SciencesTehran University of Medical Sciences · IRTorbat Heydarieh University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porphyromonas gingivalis is a primary causative agent of chronic periodontitis. Moreover, it leads to several systemic diseases, including rheumatoid arthritis, cardiovascular, neurodegenerative, and Alzheimer's diseases. It seems that the development of a vaccine against this bacterium is necessary. Thus, this study decided to identify novel immunogenic targets and developed multiple epitope-based vaccines against P. gingivalis. For this purpose, the pan/core-proteome of this bacterium was studied, and the suitable vaccine targets were selected based on different properties, including exposed localization of proteins, antigenicity, non-allergenicity, non-similarity to host proteome, stability, B-cell epitopes and MHC II binding sites, sequence conservation, molecular docking, and immune simulation. Through the quartile scoring method, 12 proteins with ≥ 20 scores were considered as suitable immunogenic targets. The results of the protein domain and functional class search showed that most of the immunogenic proteins were involved in the transport and metabolism of inorganic ions and lipids. In addition, two unknown function proteins, including WP_004584259.1 and WP_099780539.1 were detected as immunogenic targets. Three constructions carrying multi-epitopes were generated including Naked, LCL, and as chimeric structures. Among them, FliC chimeric protein had the strongest affinity to the human TLR2, 4, and 6, while the LCL platform represented the highest level of immune stimulation response. The obtained results from this study revealed new insights into prophylactic routes against P. gingivalis by introducing novel immunogenic targets. However, further investigations, including site-directed mutation and immunoassay are needed to confirm the pathogenic role and protectivity of these novel proteins.

Indexed as

Porphyromonas gingivalisVaccinologyComputational BiologyEpitopes, B-LymphocyteEpitopes, T-LymphocyteHumansMolecular Docking SimulationProteomeVaccines, SubunitEpitopes, B-LymphocyteEpitopes, T-LymphocyteProteomeVaccines, Subunit

Identifiers

PMID36040920
PMCPMC9426909
OpenAlexW4293585865

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.