Evidence map›Paper›PMID 36040798›Full record

ArticleJCI insight2022

DNA promoter hypermethylation of melanocyte lineage genes determines melanoma phenotype.

Adriana Sanna, Bengt Phung, Shamik Mitra, Martin Lauss, Jiyeon Choi, Tongwu Zhang, Ching-Ni Njauw, Eugenia Cordero, Katja Harbst, Frida Rosengren and 10 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 3 countries.

Adriana SannaDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Bengt PhungDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Shamik MitraDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Martin LaussDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Jiyeon ChoiLaboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, Maryland, USA.
Tongwu ZhangLaboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, Maryland, USA.
Ching-Ni NjauwDepartment of Dermatology, Harvard Medical School, Boston, Massachusetts, USA.
Eugenia CorderoDivision of Translational Cancer Research, Department of Laboratory Medicine.
Katja HarbstDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Frida RosengrenDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Rita CabritaDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Iva JohanssonDepartment of Clinical Pathology, Skåne University Hospital; and.
Karolin IsakssonDivision of Surgery, Department of Clinical Sciences, Lund University, Lund, Sweden.
Christian IngvarDivision of Surgery, Department of Clinical Sciences, Lund University, Lund, Sweden.
Ana CarneiroDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Kevin BrownLaboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, Maryland, USA.
Hensin TsaoDepartment of Dermatology, Harvard Medical School, Boston, Massachusetts, USA.
My AnderssonDepartment of Neurology, Epilepsy Center, Lund University, Lund, Sweden.
Kristian PietrasDivision of Translational Cancer Research, Department of Laboratory Medicine.
Göran JönssonDivision of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden.
Lund University · SENational Cancer Institute · USHarvard University · USTranslational Research in Oncology · FRSkåne University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellular stress contributes to the capacity of melanoma cells to undergo phenotype switching into highly migratory and drug-tolerant dedifferentiated states. Such dedifferentiated melanoma cell states are marked by loss of melanocyte-specific gene expression and increase of mesenchymal markers. Two crucial transcription factors, microphthalmia-associated transcription factor (MITF) and SRY-box transcription factor 10 (SOX10), important in melanoma development and progression, have been implicated in this process. In this study we describe that loss of MITF is associated with a distinct transcriptional program, MITF promoter hypermethylation, and poor patient survival in metastatic melanoma. From a comprehensive collection of melanoma cell lines, we observed that MITF-methylated cultures were subdivided in 2 distinct subtypes. Examining mRNA levels of neural crest-associated genes, we found that 1 subtype had lost the expression of several lineage genes, including SOX10. Intriguingly, SOX10 loss was associated with SOX10 gene promoter hypermethylation and distinct phenotypic and metastatic properties. Depletion of SOX10 in MITF-methylated melanoma cells using CRISPR/Cas9 supported these findings. In conclusion, this study describes the significance of melanoma state and the underlying functional properties explaining the aggressiveness of such states.

Indexed as

MelanomaMicrophthalmia-Associated Transcription FactorDNAHumansMelanocytesPhenotypeRNA, MessengerSOXE Transcription FactorsDNAMicrophthalmia-Associated Transcription FactorRNA, MessengerSOXE Transcription FactorsCell BiologyMelanomaOncology

Identifiers

PMID36040798
PMCPMC9675437
OpenAlexW4293581982

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.