Evidence map›Paper›PMID 36040684›Full record

ArticleGenes & genomics2022

The inflammatory signature in monocytes of Sjögren's syndrome and systemic lupus erythematosus, revealed by the integrated Reactome and drug target analysis.

Kyung Eun Lee, Seyoung Mun, Song-Mi Kim, Wonseok Shin, Won Jung, Joon Paek, Jungnam Lee, Erin Hudson, Wesley H Reeves, Kyudong Han and 1 more

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Article in Genes & genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Shared gene signatures between rheumatoid arthritis and Sjögren's syndrome.American journal of clinical and experimental immunology · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Frontiers in immunology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Defining the Role of Monocytes in Sjögren's Syndrome.International journal of molecular sciences · 2022
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Kyung Eun Lee *Department of Oral Medicine, School of Dentistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea.
Seyoung Mun *Center for Bio-Medical Engineering Core Facility, Dankook University, Cheonan, 31116, Republic of Korea.
Song-Mi KimCenter for Bio-Medical Engineering Core Facility, Dankook University, Cheonan, 31116, Republic of Korea.
Wonseok ShinDepartment of Microbiology, College of Science and Technology, Dankook University, Cheonan, 31116, Republic of Korea.
Won JungDepartment of Oral Medicine, School of Dentistry, Jeonbuk National University, Jeonju, 54896, Republic of Korea.
Joon PaekDivision of Oral Medicine, Department of Oral and Maxillofacial Diagnostic Sciences, Center for Orphaned Autoimmune Disorders, College of Dentistry, University of Florida, UF Health Oral Medicine, 1395 Center Drive, Gainesville, FL, 32610, USA.
Jungnam LeeDivision of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, University of Florida, Gainesville, FL, 32610, USA.
Erin HudsonDivision of Rheumatology and Clinical Immunology, College of Medicine, University of Florida, Gainesville, FL, 32610, USA.
Wesley H ReevesDivision of Rheumatology and Clinical Immunology, College of Medicine, University of Florida, Gainesville, FL, 32610, USA.
Kyudong Han *Center for Bio-Medical Engineering Core Facility, Dankook University, Cheonan, 31116, Republic of Korea. kyudong.han@gmail.com.ORCID 0000-0001-6791-2408
Seunghee Cha *Division of Oral Medicine, Department of Oral and Maxillofacial Diagnostic Sciences, Center for Orphaned Autoimmune Disorders, College of Dentistry, University of Florida, UF Health Oral Medicine, 1395 Center Drive, Gainesville, FL, 32610, USA. SCHA@dental.ufl.edu.
Dankook University · KRUniversity of Florida · USUniversity of Florida Health · USDankook University Hospital · KRJeonbuk National University · KRJeonbuk National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe innate immune regulation, especially by the type I IFN signature in the CD14+ monocytes, is known to be critical in the pathogenesis of autoimmune Sjögren's syndrome (SjS) and systemic lupus erythematosus (SLE).

objectiveSince patients with one condition can be overlapped with another, this study is to identify shared differentially expressed genes (DEGs) in SjS and SLE compared to healthy controls (HCs) and refine transcriptomic profiles with the integrated Reactome and gene-drug network analysis for an anti-inflammation therapy.

methodsCD14+ monocytes were purified from whole blood of SjS and SLE patients (females, ages from 32 to 62) and subject to bulk RNA-sequencing, followed by data analyses for comparison with HC monocytes (females, ages 30 and 33). Functional categorizations, using Gene Ontology (GO) and the Reactome pathway analysis, were performed and DEGs associated with therapeutic drugs were identified from the Drug Repurposing Hub (DHUB) database.

resultsThe GO analysis revealed that DEGs in the inflammatory response and the cellular response to cytokine were highly enriched in both conditions. A propensity toward M1 macrophage differentiation appears to be prominent in SjS while the Response to Virus was significant in SLE monocytes. Through the Reactome pathway analysis, DEGs in the IFN signaling and the cytokine signaling in immune system were most significantly enriched in both. Upregulation of NGF-induced transcription activity in SjS and the complement cascade activity in SLE were also noted. Multiple anti-inflammatory drugs, such as prostaglandin-endoperoxide synthase and angiotensin-I-converting- enzyme were associated with the DEGs in these conditions.

conclusionsTaken together, our analysis indicates distinct inflammatory transcriptomic profiles shared in SjS and SLE monocytes. Comprehensive characterizations of the data from these conditions will ultimately allow differential diagnosis of each condition and identification of therapeutic targets.

Indexed as

Lupus Erythematosus, SystemicSjogren's SyndromeAdultAngiotensinsCytokinesFemaleHumansMiddle AgedMonocytesNerve Growth FactorProstaglandin-Endoperoxide SynthasesRNAAngiotensinsCytokinesNerve Growth FactorProstaglandin-Endoperoxide SynthasesRNAAutoimmun DiseasesGene-drug networkMonocytesRNA-seqSjögren’s syndromeSystemic lupus erythematosus

Identifiers

PMID36040684
OpenAlexW4293560590

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.