Evidence map›Paper›PMID 36040254›Full record

ArticleProtein science : a publication of the Protein Society2022

Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination.

Shreyas Arvindekar, Matthew J Jackman, Jason K K Low, Michael J Landsberg, Joel P Mackay, Shruthi Viswanath

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. An integrated structural model of the DNA damage-responsive H3K4me3 binding WDR76:SPIN1 complex with the nucleosome.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Envisioning a role for nuclear actin in prophase I spermatocytes.Frontiers in cell and developmental biology · 2023
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Shreyas ArvindekarNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.ORCID 0000-0002-9945-8534
Matthew J JackmanSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0001-7464-5694
Jason K K LowSchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0003-0862-0012
Michael J LandsbergSchool of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.ORCID 0000-0002-2464-990X
Joel P MackaySchool of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0001-7508-8033
Shruthi ViswanathNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.ORCID 0000-0002-9061-8407
Tata Institute of Fundamental Research · INThe University of Queensland · AUThe University of Sydney · AU

Funding

XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COHEN, BRUCE E · 1985 to 2011
$17.6M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NCRR NIH HHS P41 RR001081NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

The nucleosome remodeling and deacetylase (NuRD) complex is a chromatin-modifying assembly that regulates gene expression and DNA damage repair. Despite its importance, limited structural information describing the complete NuRD complex is available and a detailed understanding of its mechanism is therefore lacking. Drawing on information from SEC-MALLS, DIA-MS, XLMS, negative-stain EM, X-ray crystallography, NMR spectroscopy, secondary structure predictions, and homology models, we applied Bayesian integrative structure determination to investigate the molecular architecture of three NuRD sub-complexes: MTA1-HDAC1-RBBP4, MTA1

Indexed as

Mi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesBayes TheoremChromatin Assembly and DisassemblyHistone DeacetylasesHistone DeacetylasesMi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesBayesian integrative structure determinationchromatin remodeling complexescryo-EMhistone modificationintegrative modelingnucleosome remodeling and deacetylase complexXLMS

Identifiers

PMID36040254
PMCPMC9413472
OpenAlexW4293109432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.