Evidence map›Paper›PMID 36040174›Full record

ArticleMicrobiology spectrum2022

Diaminopimelic Acid Metabolism by

Li-Yuan Zheng, Ning-Hua Liu, Shuai Zhong, Yang Yu, Xi-Ying Zhang, Qi-Long Qin, Xiao-Yan Song, Yu-Zhong Zhang, Huihui Fu, Min Wang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Marine life science & technology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Li-Yuan ZhengState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Ning-Hua LiuState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Shuai ZhongState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Yang YuState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Xi-Ying ZhangState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Qi-Long QinState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Xiao-Yan SongState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Yu-Zhong ZhangState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.ORCID 0000-0002-2017-1005
Huihui FuCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of Chinagrid.4422.0, Qingdao, China.
Min WangCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of Chinagrid.4422.0, Qingdao, China.
Andrew McMinnCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of Chinagrid.4422.0, Qingdao, China.ORCID 0000-0002-2133-3854
Xiu-Lan ChenState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.ORCID 0000-0003-2991-3631
Ping-Yi LiState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong Universitygrid.27255.37, Qingdao, China.
Shandong University · CNOcean University of China · CNQingdao National Laboratory for Marine Science and Technology · CNUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diaminopimelic acid (DAP) is a unique component of the cell wall of Gram-negative bacteria. It is also an important component of organic matter and is widely utilized by microbes in the world's oceans. However, neither DAP concentrations nor marine DAP-utilizing microbes have been investigated. Here, DAP concentrations in seawater were measured and the diversity of marine DAP-utilizing bacteria and the mechanisms for their DAP metabolism were investigated. Free DAP concentrations in seawater, from surface to a 5,000 m depth, were found to be between 0.61 μM and 0.96 μM in the western Pacific Ocean. DAP-utilizing bacteria from 20 families in 4 phyla were recovered from the western Pacific seawater and 14 strains were further isolated, in which

Indexed as

Carboxy-LyasesDiaminopimelic AcidGram-Negative BacteriaPeptidoglycanBacteriaLysineCarboxy-LyasesDiaminopimelic AcidLysinePeptidoglycandiaminopimelic acid contentdiaminopimelic acid decarboxylasePseudomonadotaseawater

Identifiers

PMID36040174
PMCPMC9602339
OpenAlexW4293567318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.