Evidence map›Paper›PMID 36037714›Full record

ArticleBiosensors & bioelectronics2022

Highly sensitive protein detection by aptamer-based single-molecule kinetic fingerprinting.

Tanmay Chatterjee, Alexander Johnson-Buck, Nils G Walter

Open access · greenAbstract read
In one paragraph

Article in Biosensors & bioelectronics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tanmay ChatterjeeSingle Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109, United States.
Alexander Johnson-BuckaLight Sciences, Inc., 333 Jackson Plaza Suite 460, Ann Arbor, Michigan, 48103, United States. Electronic address: alex_johnson-buck@alightsci.com.
Nils G WalterSingle Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109, United States. Electronic address: nwalter@umich.edu.
University of Michigan · USAlion Science and Technology (United States) · US

Funding

The RNA nanomachines of the gene expression machinery dissected at the single molecule levelR35GM131922 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NILS G WALTER · 2019 to 2026
$6.9M
Optimization and Validation of Single-Molecule Kinetic Fingerprinting Technology for Rapid, Ultra-Specific Detection of Cancer MutationsR33CA229023 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TEWARI, MUNEESH, WALTER, NILS G · 2018 to 2020
$1.2M
Highly specific, amplification-free, single-molecule counting of rare methylated DNA cancer biomarkersR21CA225493 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TEWARI, MUNEESH, WALTER, NILS G · 2020 to 2020
$609k
NCI NIH HHS R21 CA225493NCI NIH HHS R33 CA229023NIGMS NIH HHS R35 GM131922
6 · The paper itself

Abstract

Sensitive assays of protein biomarkers play critical roles in clinical diagnostics and biomedical research. Such assays typically employ immunoreagents such as monoclonal antibodies that suffer from several drawbacks, including relatively tedious production, significant batch-to-batch variability, and challenges in site-specific, stoichiometric modification with fluorophores or other labels. One proposed alternative to such immunoreagents, nucleic acid aptamers generated by systematic evolution of ligand by exponential enrichment (SELEX), can be chemically synthesized with much greater ease, precision, and reproducibility than antibodies. However, most aptamers exhibit relatively poor affinity, yielding low sensitivity in the assays employing them. Recently, single molecule recognition through equilibrium Poisson sampling (SiMREPS) has emerged as a platform for detecting proteins and other biomarkers with high sensitivity without requiring high-affinity detection probes. In this manuscript, we demonstrate the applicability and advantages of aptamers as detection probes in SiMREPS as applied to two clinically relevant biomarkers, VEGF

Indexed as

Aptamers, NucleotideBiosensing TechniquesNucleic AcidsAntibodies, MonoclonalBiomarkersHumansInterleukin-8LigandsReproducibility of ResultsSELEX Aptamer TechniqueVascular Endothelial Growth Factor AAntibodies, MonoclonalAptamers, NucleotideBiomarkersInterleukin-8LigandsNucleic AcidsVascular Endothelial Growth Factor AAnalyte detectionAptamerKinetic fingerprintingProtein biomarkersSensitivitySingle molecule fluorescence microscopy

Identifiers

PMID36037714
PMCPMC12924676
OpenAlexW4292622149

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.