Evidence map›Paper›PMID 36037556›Full record

ArticleMedical image analysis2022

STAMP: Simultaneous Training and Model Pruning for low data regimes in medical image segmentation.

Nicola K Dinsdale, Mark Jenkinson, Ana I L Namburete

Abstract read
In one paragraph

Article in Medical image analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Lean Unet: a compact model for image segmentation.International journal of computer assisted radiology and surgery · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. How Does Pruning Impact Long-Tailed Multi-label Medical Image Classifiers?Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nicola K DinsdaleWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, UK; Oxford Machine Learning in NeuroImaging Lab (OMNI), Department of Computer Science, University of Oxford, UK. Electronic address: nicola.dinsdale@cs.ox.ac.uk.
Mark JenkinsonWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, UK; Australian Institute for Machine Learning (AIML), School of Computer Science, University of Adelaide, Adelaide, Australia; South Australian Health and Medical Research Institute (SAHMRI), North Terrace, Adelaide, Australia.
Ana I L NambureteOxford Machine Learning in NeuroImaging Lab (OMNI), Department of Computer Science, University of Oxford, UK.

Funding

Medical Research CouncilWellcome Trust 203139/Z/16/ZWellcome Trust 203141/Z/16/ZWellcome Trust 215573/Z/19/Z
6 · The paper itself

Abstract

Acquisition of high quality manual annotations is vital for the development of segmentation algorithms. However, to create them we require a substantial amount of expert time and knowledge. Large numbers of labels are required to train convolutional neural networks due to the vast number of parameters that must be learned in the optimisation process. Here, we develop the STAMP algorithm to allow the simultaneous training and pruning of a UNet architecture for medical image segmentation with targeted channelwise dropout to make the network robust to the pruning. We demonstrate the technique across segmentation tasks and imaging modalities. It is then shown that, through online pruning, we are able to train networks to have much higher performance than the equivalent standard UNet models while reducing their size by more than 85% in terms of parameters. This has the potential to allow networks to be directly trained on datasets where very low numbers of labels are available.

Indexed as

Image Processing, Computer-AssistedMagnetic Resonance ImagingAlgorithmsHumansLearningNeural Networks, ComputerLow dataModel pruningSegmentation

Identifiers

PMID36037556
PMCPMC7618873

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.