Evidence map›Paper›PMID 36037333›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Sequence-dependent mechanochemical coupling of helicase translocation and unwinding at single-nucleotide resolution.

Andrew H Laszlo, Jonathan M Craig, Momčilo Gavrilov, Ramreddy Tippana, Ian C Nova, Jesse R Huang, Hwanhee C Kim, Sarah J Abell, Mallory deCampos-Stairiker, Jonathan W Mount and 6 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Inhibition of the SARS-CoV-2 helicase at single-nucleotide resolution.bioRxiv : the preprint server for biology · 2022
    Article
  11. Sequence-dependent mechanochemical coupling of helicase translocation and unwinding at single-nucleotide resolution.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Andrew H LaszloDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7853-0533
Jonathan M CraigDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0003-4791-5112
Momčilo GavrilovDepartment of Physics, Johns Hopkins University, Baltimore, MD 21218.ORCID 0000-0002-5816-3406
Ramreddy TippanaDepartment of Physics, Johns Hopkins University, Baltimore, MD 21218.
Ian C NovaDepartment of Physics, University of Washington, Seattle, WA 98195.
Jesse R HuangDepartment of Physics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-1998-3751
Hwanhee C KimDepartment of Physics, University of Washington, Seattle, WA 98195.
Sarah J AbellDepartment of Physics, University of Washington, Seattle, WA 98195.
Mallory deCampos-StairikerDepartment of Physics, University of Washington, Seattle, WA 98195.
Jonathan W MountDepartment of Physics, University of Washington, Seattle, WA 98195.
Jasmine L BowmanDepartment of Physics, University of Washington, Seattle, WA 98195.
Katherine S BakerDepartment of Physics, University of Washington, Seattle, WA 98195.
Hugh HiginbothamDepartment of Physics, University of Washington, Seattle, WA 98195.
Dmitriy BobrovnikovDepartment of Physics, Johns Hopkins University, Baltimore, MD 21218.
Taekjip HaDepartment of Physics, Johns Hopkins University, Baltimore, MD 21218.ORCID 0000-0003-2195-6258
Jens H GundlachDepartment of Physics, University of Washington, Seattle, WA 98195.
University of Washington · USJohns Hopkins University · US

Funding

Nanopore sequencing of DNA with MspAR01HG005115 · NHGRI · UNIVERSITY OF WASHINGTON · PI GUNDLACH, JENS, LASZLO, ANDREW · 2009 to 2024
$14.0M
Single Molecule Studies of Nucleic Acids RemodelingR35GM122569 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Taekjip Ha · 2017 to 2026
$3.5M
HHS | NIH | National Human Genome Research Institute (NHGRI) R01HG005115HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM122569NHGRI NIH HHS R01 HG005115NIGMS NIH HHS R35 GM122569
6 · The paper itself

Abstract

We used single-molecule picometer-resolution nanopore tweezers (SPRNT) to resolve the millisecond single-nucleotide steps of superfamily 1 helicase PcrA as it translocates on, or unwinds, several kilobase-long DNA molecules. We recorded more than two million enzyme steps under various assisting and opposing forces in diverse adenosine tri- and diphosphate conditions to comprehensively explore the mechanochemistry of PcrA motion. Forces applied in SPRNT mimic forces and physical barriers PcrA experiences

Indexed as

DNA HelicasesNucleotidesAdenosine TriphosphateDNADNA, Single-StrandedKineticsAdenosine TriphosphateDNADNA HelicasesDNA, Single-StrandedNucleotidesDNAforce spectroscopyhelicasesingle-moleculeSPRNT

Identifiers

PMID36037333
PMCPMC9457475
OpenAlexW4293485588

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.