Evidence map›Paper›PMID 36037049›Full record

ArticleBrainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop)2020

A Two-Stage Cascade Model with Variational Autoencoders and Attention Gates for MRI Brain Tumor Segmentation.

Chenggang Lyu, Hai Shu

Abstract read
In one paragraph

Article in Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Head and Neck Tumor Segmentation Using Pre-RT MRI Scans and Cascaded DualUNet.Head and Neck Tumor Segmentation for MR-Guided Applications : First MICCAI Challenge, HNTS-MRG 2024, held in conjunction with MICCAI 2024, Marrakesh, Morocco, October 17, 2024, proceedings · 2025
    Article
  6. Article
  7. Article
  8. Brain tumor segmentation in multimodal MRIFrontiers in neuroscience · 2022
    Article
  9. BiTr-Unet: a CNN-Transformer Combined Network for MRI Brain Tumor Segmentation.Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) · 2021
    Article
  10. Overview of Multi-Modal Brain Tumor MR Image Segmentation.Healthcare (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Chenggang LyuDepartment of Biostatistics, School of Global Public Health, New York University, New York, NY 10003, USA.
Hai ShuDepartment of Biostatistics, School of Global Public Health, New York University, New York, NY 10003, USA.

Funding

Deep-learning based spatial multiple testing for Alzheimer's neuroimaging dataR21AG070303 · NIA · NEW YORK UNIVERSITY · PI SHU, HAI · 2020 to 2020
$436k
NIA NIH HHS R21 AG070303
6 · The paper itself

Abstract

Automatic MRI brain tumor segmentation is of vital importance for the disease diagnosis, monitoring, and treatment planning. In this paper, we propose a two-stage encoder-decoder based model for brain tumor subregional segmentation. Variational autoencoder regularization is utilized in both stages to prevent the overfitting issue. The second-stage network adopts attention gates and is trained additionally using an expanded dataset formed by the first-stage outputs. On the BraTS 2020 validation dataset, the proposed method achieves the mean Dice score of 0.9041, 0.8350, and 0.7958, and Hausdorff distance (95%) of 4.953 , 6.299, 23.608 for the whole tumor, tumor core, and enhancing tumor, respectively. The corresponding results on the BraTS 2020 testing dataset are 0.8729, 0.8357, and 0.8205 for Dice score, and 11.4288, 19.9690, and 15.6711 for Hausdorff distance. The code is publicly available at https://github.com/shu-hai/two-stage-VAE-Attention-gate-BraTS2020.

Indexed as

Attention gateBrain tumor segmentationEncoder-decoder networkVariational autoencoder

Identifiers

PMID36037049
PMCPMC9419250

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.