Evidence map›Paper›PMID 36035248›Full record

ArticleHGG advances2022

Developmental genomics of limb malformations: Allelic series in association with gene dosage effects contribute to the clinical variability.

Ruizhi Duan, Hadia Hijazi, Elif Yilmaz Gulec, Hatice Koçak Eker, Silvia R Costa, Yavuz Sahin, Zeynep Ocak, Sedat Isikay, Ozge Ozalp, Sevcan Bozdogan and 20 more

Abstract read
In one paragraph

Article in HGG advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Heterozygous deletion ofJournal of medical genetics · 2024
    Article
  6. Article
  7. Article
  8. Functional genomics and small molecules in mitochondrial neurodevelopmental disorders.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Ruizhi DuanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Hadia HijaziDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Elif Yilmaz GulecDepartment of Medical Genetics, School of Medicine, Istanbul Medeniyet University, Istanbul, Turkey.
Hatice Koçak EkerDepartment of Medical Genetics, Konya City Hospital, Konya, Turkey.
Silvia R CostaHuman Genome and Stem Cell Research Center, Institute of Bioscience, Universidade de São Paulo, São Paulo, Brazil.
Yavuz SahinMedical Genetics, Genoks Genetics Center, Ankara, Turkey.
Zeynep OcakDepartment of Medical Genetics, Faculty of Medicine, Istinye University, Istanbul, Turkey.
Sedat IsikayDepartment of Pediatric Neurology, Faculty of Medicine, Gaziantep University, Gaziantep, Turkey.
Ozge OzalpDepartment of Medical Genetics, Adana City Training and Research Hospital, Adana, Turkey.
Sevcan BozdoganDepartment of Medical Genetics, Faculty of Medicine, Cukurova University, Adana, Turkey.
Huseyin AslanDepartment of Medical Genetics, Adana City Training and Research Hospital, Adana, Turkey.
Nursel ElciogluDepartment of Pediatric Genetics, School of Medicine, Marmara University, Istanbul, Turkey.
Débora R BertolaHuman Genome and Stem Cell Research Center, Institute of Bioscience, Universidade de São Paulo, São Paulo, Brazil.
Alper GezdiriciDepartment of Medical Genetics, Basaksehir Cam and Sakura City Hospital, Istanbul, Turkey.
Haowei DuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jawid M FatihDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Christopher M GrochowskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Gulsen AkayDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Baylor-Hopkins Center for Mendelian Genomics
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Shen GuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Zeynep Coban-AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
V Reid SuttonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Frequency of variants of unknown significance by ancestry groups in the All of Us Research Program cohortU01HG011758 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI RICHARD A GIBBS, JAMES R. LUPSKI · 2021 to 2026
$13.8M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U01 HG011758NHGRI NIH HHS UM1 HG006542NINDS NIH HHS R35 NS105078
6 · The paper itself

Abstract

Genetic heterogeneity, reduced penetrance, and variable expressivity, the latter including asymmetric body axis plane presentations, have all been described in families with congenital limb malformations (CLMs). Interfamilial and intrafamilial heterogeneity highlight the complexity of the underlying genetic pathogenesis of these developmental anomalies. Family-based genomics by exome sequencing (ES) and rare variant analyses combined with whole-genome array-based comparative genomic hybridization were implemented to investigate 18 families with limb birth defects. Eleven of 18 (61%) families revealed explanatory variants, including 7 single-nucleotide variant alleles and 3 copy number variants (CNVs), at previously reported "disease trait associated loci":

Indexed as

allelic seriesAlu/Alu-mediated rearrangementbirth defectclinical genomicscongenital limb malformationdevelopmental genomicsexome sequencing analysisgene dosage effectlimb developmentSV mutagenesis

Identifiers

PMID36035248
PMCPMC9403727

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.